Evidence map›Paper›PMID 39389974›Full record

ArticleNature communications2024

A highly conserved SusCD transporter determines the import and species-specific antagonism of Bacteroides ubiquitin homologues.

Ming Tong, Jinghua Xu, Weixun Li, Kun Jiang, Yan Yang, Zhe Chen, Xuyao Jiao, Xiangfeng Meng, Mingyu Wang, Jie Hong and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Discovery of a secretedGut microbes · 2026
    Article
  3. Article
  4. Article
  5. Structural basis of iron piracy by human gutProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Article
  7. Article
  8. Review
  9. A nonenzymatic effector disruptsProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Ming Tong *State Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Jinghua Xu *State Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Weixun Li *State Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.ORCID 0000-0001-5644-4223
Kun Jiang *State Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.ORCID 0000-0003-4039-975X
Yan YangState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Zhe ChenState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.ORCID 0000-0002-3761-5653
Xuyao JiaoState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.ORCID 0000-0002-9110-2234
Xiangfeng MengState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Mingyu WangState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.ORCID 0000-0003-1215-9556
Jie HongNHC Key Laboratory of Digestive Diseases, Division of Gastroenterology and Hepatology, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai Institute of Digestive Disease, Shanghai Cancer Institute, Shanghai, 200001, China.ORCID 0000-0001-9579-0794
Hongan LongInstitute of Evolution and Marine Biodiversity, KLMME, Ocean University of China, Qingdao, 266003, China.
Shuang-Jiang LiuState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.ORCID 0000-0002-7585-310X
Bentley LimDepartment of Microbial Pathogenesis and Microbial Sciences Institute, Yale University School of Medicine, New Haven, CT, 06536, USA.ORCID 0000-0002-7751-7927
Xiang GaoState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China. xgao@email.sdu.edu.cn.ORCID 0000-0001-6397-5639

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Efficient interbacterial competitions and diverse defensive strategies employed by various bacteria play a crucial role in acquiring a hold within a dense microbial community. The gut symbiont Bacteroides fragilis secretes an antimicrobial ubiquitin homologue (BfUbb) that targets an essential periplasmic PPIase to drive intraspecies bacterial competition. However, the mechanisms by which BfUbb enters the periplasm and its potential for interspecies antagonism remain poorly understood. Here, we employ transposon mutagenesis and identify a highly conserved TonB-dependent transporter SusCD (designated as ButCD) in B. fragilis as the BfUbb transporter. As a putative protein-related nutrient utilization system, ButCD is widely distributed across diverse Bacteroides species with varying sequence similarity, resulting in distinct import efficiency of Bacteroides ubiquitin homologues (BUbb) and thereby determining the species-specific toxicity of BUbb. Cryo-EM structural and functional investigations of the BfUbb-ButCD complex uncover distinctive structural features of ButC that are crucial for its targeting by BfUbb. Animal studies further demonstrate the specific and efficient elimination of enterotoxigenic B. fragilis (ETBF) in the murine gut by BfUbb, suggesting its potential as a therapeutic against ETBF-associated inflammatory bowel disease and colorectal cancer. Our findings provide a comprehensive elucidation of the species-specific toxicity exhibited by BUbb and explore its potential applications.

Indexed as

Bacterial ProteinsBacteroides fragilisMembrane Transport ProteinsAnimalsBacteroidesCryoelectron MicroscopyDNA Transposable ElementsFemaleGastrointestinal MicrobiomeHumansMiceSpecies SpecificityUbiquitinBacterial ProteinsDNA Transposable ElementsMembrane Transport ProteinsUbiquitin

Identifiers

PMID39389974
PMCPMC11467351

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.