Evidence map›Paper›PMID 39396971›Full record

ArticleAntimicrobial resistance and infection control2024

Drug-resistance characteristics, genetic diversity, and transmission dynamics of multidrug-resistant or rifampicin-resistant Mycobacterium tuberculosis from 2019 to 2021 in Sichuan, China.

Wenfeng Gao, Weina Wang, Jing Li, Yuan Gao, Shu Zhang, Hui Lei, Lu He, Ting Li, Jinge He

Abstract read
In one paragraph

Article in Antimicrobial resistance and infection control, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  4. [Drug resistance characteristics of pulmonary tuberculosis and factors associated with rifampicin resistance in Changsha from 2018 to 2025].Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2026
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  12. Sentinel-Site-Based Surveillance ofAntibiotics (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Wenfeng GaoSichuan Center for Disease Control and Prevention, Institute for Tuberculosis Control and Prevention, Chengdu, 610041, Sichuan, China.
Weina WangSichuan Center for Disease Control and Prevention, Institute for Tuberculosis Control and Prevention, Chengdu, 610041, Sichuan, China.
Jing LiSichuan Center for Disease Control and Prevention, Institute for Tuberculosis Control and Prevention, Chengdu, 610041, Sichuan, China.
Yuan GaoSichuan Center for Disease Control and Prevention, Institute for Tuberculosis Control and Prevention, Chengdu, 610041, Sichuan, China.
Shu ZhangSichuan Center for Disease Control and Prevention, Institute for Tuberculosis Control and Prevention, Chengdu, 610041, Sichuan, China.
Hui LeiSichuan Center for Disease Control and Prevention, Institute for Tuberculosis Control and Prevention, Chengdu, 610041, Sichuan, China.
Lu HeSichuan Center for Disease Control and Prevention, Institute for Tuberculosis Control and Prevention, Chengdu, 610041, Sichuan, China.
Ting LiSichuan Center for Disease Control and Prevention, Institute for Tuberculosis Control and Prevention, Chengdu, 610041, Sichuan, China.
Jinge HeSichuan Center for Disease Control and Prevention, Institute for Tuberculosis Control and Prevention, Chengdu, 610041, Sichuan, China. hejinge@163.com.

Funding

National Natural Science Foundation of China 32070135
6 · The paper itself

Abstract

backgroundMultidrug- or rifampicin-resistant tuberculosis (TB; MDR/RR-TB) is a significant public health threat. However, the mechanisms involved in its transmission in Sichuan, China are unclear. To provide a scientific basis for MDR/RR-TB control and prevention, we investigated the drug-resistance characteristics, genetic diversity, and transmission dynamics and analyzed the demographic and clinical characteristics of patients to identify risk factors for the acquisition of MDR/RR-TB in Sichuan, Western China.

methodsWhole-genome sequencing was performed using a sample comprised of all MDR/RR-TB strains isolated from patients with pulmonary TB (≥ 15 years) at the 22 surveillance sites in Sichuan province between January 2019 and December 2021, to analyze genotypic drug resistance and genetic diversity. Moreover, we performed statistical analyses of the epidemiological characteristics and risk factors associated with the transmission dynamics of MDR/RR-TB.

resultsThe final analysis included 278 MDR/RR TB strains. Lineage 2.2, the major sub-lineage, accounted for 82.01% (228/278) of isolates, followed by lineage 4.5 (9.72%, 27/278), lineage 4.4 (6.83%, 19/278), and lineage 4.2 (1.44%, 4/278). The drug resistance rates, ranging from high to low, were as follows: isoniazid (229 [82.37%]), streptomycin (177 [63.67%]), ethambutol (144 [51.80%]), pyrazinamide (PZA, 119 [42.81%]), fluoroquinolones (FQs, 93 [33.45%]). Further, the clofazimine, bedaquiline, and delamanid resistance rates were 2.88, 2.88, and 1.04%, respectively. The gene composition cluster rate was 32.37% (90/278). In addition, 83.81% (233/278) of MDR/RR-TB cases were determined to be likely caused by transmission. Finally, patients infected with lineage two strains and strains with the KatG S315T amino acid substitution presented a higher risk of MDR/RR-TB transmission.

conclusionTransmission plays a significant role in the MDR/RR-TB burden in Sichuan province, and lineage 2 strains and strains harboring KatG S315T have a high probability of transmission. Further, high levels of FQ and PZA drug resistance suggest an urgent need for drug susceptibility testing prior to designing therapeutic regimens. New anti-TB drugs need to be used standardly and TB strains should be regularly monitored for resistance to these drugs.

Indexed as

Antitubercular AgentsDrug Resistance, Multiple, BacterialGenetic VariationMycobacterium tuberculosisRifampinTuberculosis, Multidrug-ResistantAdolescentAdultAgedChinaFemaleGenotypeHumansMaleMicrobial Sensitivity TestsMiddle AgedAntitubercular AgentsRifampinGenetic diversityMultidrug-resistant or rifampicin-resistant tuberculosis (MDR/RR-TB)Transmission dynamicsWhole-genome sequencing (WGS)

Identifiers

PMID39396971
PMCPMC11472436

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.