Evidence map›Paper›PMID 39402491›Full record

ArticleBMC genomic data2024

Genome-wide profiling of bZIP transcription factors in Camelina sativa: implications for development and stress response.

Shahroz Rahman, Abdul Rehman Ikram, Latifa AlHusnain, Sajid Fiaz, Muhammad Umar Rafique, Muhammad Amjad Ali, Muneera D F AlKahtani, Kotb A Attia, Farrukh Azeem

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Article in BMC genomic data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Evolutionary and pan-genomic analysis of theFrontiers in plant science · 2026
    Article
4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Shahroz RahmanDepartment of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan.
Abdul Rehman IkramDepartment of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan.
Latifa AlHusnainDepartment of Biology, College of Science, Princess Nourah Bint Abdulrahman University, P.O. Box 84428, Riyadh, 11671, Saudi Arabia.
Sajid FiazInstitute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, 54590, Pakistan. sajidfiaz50@yahoo.com.
Muhammad Umar RafiqueDepartment of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan.
Muhammad Amjad AliDepartment of Plant Pathology, University of Agriculture Faisalabad, Faisalabad, 38040, Pakistan.
Muneera D F AlKahtaniDepartment of Biology, College of Science, Princess Nourah Bint Abdulrahman University, P.O. Box 84428, Riyadh, 11671, Saudi Arabia.
Kotb A AttiaCenter of Excellence in Biotechnology Research, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia.ORCID http://orcid.org/0000-0002-2992-1765
Farrukh AzeemDepartment of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan. farrukh@gcuf.edu.pk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe bZIP transcription factor family, characterized by a bZIP domain, plays vital roles in plant stress responses and development. While this family has been extensively studied in various plant species, its specific functions in Camelina sativa (False Flax) remain underexplored. METHODS AND

resultsThis study identified 71 bZIP transcription factors in C. sativa, classified into nine distinct groups based on phylogenetic analysis. Subcellular localization predicted a nucleus-specific expression for these bZIPs. Analysis of GRAVY scores revealed a range from 0.469 to -1.256, indicating a spectrum from hydrophobic to hydrophilic properties. Motif analysis uncovered 10 distinct motifs, with one motif being universally present in all CsbZIPs. Conserved domain analysis highlighted several domains beyond the core bZIP domain. Protein-protein interaction predictions suggested a robust network involving CsbZIPs. Moreover, promoter analysis revealed over 60 types of cis-elements, including those responsive to stress. Expression studies through RNA-seq and Real-time RT-qPCR demonstrated high expression of CsbZIPs in roots, leaves, flowers, and stems. Specifically, CsbZIP01, CsbZIP02, CsbZIP44, and CsbZIP60 were consistently up-regulated under cold, salt, and drought stresses, whereas CsbZIP34 and CsbZIP35 were down-regulated.

conclusionThis study presents the first comprehensive genome-wide profiling of bZIP transcription factors in Camelina sativa, providing novel insights into their roles in plant development and stress response mechanisms. By identifying and characterizing the bZIP gene family in C. sativa, this research offers new opportunities for improving stress tolerance and crop resilience through targeted genetic approaches, addressing key challenges in agriculture under changing environmental conditions.

Indexed as

Basic-Leucine Zipper Transcription FactorsGene Expression Regulation, PlantPhylogenyPlant ProteinsStress, PhysiologicalBrassicaceaeGene Expression ProfilingGenome, PlantPromoter Regions, GeneticBasic-Leucine Zipper Transcription FactorsPlant ProteinsCrop resilienceFlaxPhylogenetic analysisStress responseTranscriptomics

Identifiers

PMID39402491
PMCPMC11479404

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.