Evidence map›Paper›PMID 39403211›Full record

ArticleFrontiers in veterinary science2024

RNA-Seq based selection signature analysis for identifying genomic footprints associated with the fat-tail phenotype in sheep.

Hossein Abbasabadi, Mohammad Reza Bakhtiarizadeh, Mohammad Hossein Moradi, John C McEwan

Abstract read
In one paragraph

Article in Frontiers in veterinary science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Hossein AbbasabadiDepartment of Animal and Poultry Science, College of Aburaihan, University of Tehran, Tehran, Iran.
Mohammad Reza BakhtiarizadehDepartment of Animal and Poultry Science, College of Aburaihan, University of Tehran, Tehran, Iran.
Mohammad Hossein MoradiDepartment of Animal Sciences, Faculty of Agriculture and Natural Resources, Arak University, Arak, Iran.
John C McEwanInvermay Agricultural Centre, AgResearch, Mosgiel, New Zealand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the genetic background behind fat-tail development in sheep can be useful to develop breeding programs for genetic improvement, while the genetic basis of fat-tail formation is still not well understood. Here, to identify genomic regions influencing fat-tail size in sheep, a comprehensive selection signature identification analysis was performed through comparison of fat- and thin-tailed sheep breeds. Furthermore, to gain the first insights into the potential use of RNA-Seq for selection signature identification analysis, SNP calling was performed using RNA-Seq datasets. In total, 45 RNA-Seq samples from seven cohort studies were analyzed, and the F

Indexed as

fat depositionRNA-Seq datasetsselection signaturesSNP callingthin- and fat-tailed sheep

Identifiers

PMID39403211
PMCPMC11471730

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.