Evidence map›Paper›PMID 39409892›Full record

ArticleCancers2024

Genetic Analysis of Biopsy Tissues from Colorectal Tumors in Patients with Ulcerative Colitis.

Noriko Yamamoto, Yuji Urabe, Hikaru Nakahara, Takeo Nakamura, Daisuke Shimizu, Hirona Konishi, Kazuki Ishibashi, Misa Ariyoshi, Ryo Miyamoto, Junichi Mizuno and 12 more

Abstract read
In one paragraph

Article in Cancers, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Noriko YamamotoDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.ORCID 0000-0001-6282-7183
Yuji UrabeDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.
Hikaru NakaharaDepartment of Clinical and Molecular Genetics, Hiroshima University Hospital, Hiroshima 734-8551, Japan.ORCID 0000-0003-2540-707X
Takeo NakamuraDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.
Daisuke ShimizuDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.
Hirona KonishiDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.
Kazuki IshibashiDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.
Misa AriyoshiDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.ORCID 0009-0009-7777-6855
Ryo MiyamotoDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.
Junichi MizunoDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.
Takeshi TakasagoDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.
Akira IshikawaDepartment of Molecular Pathology, Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima 734-8553, Japan.ORCID 0000-0002-1528-1939
Akiyoshi TsuboiDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.
Hidenori TanakaDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.ORCID 0000-0002-3646-5796
Ken YamashitaDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.
Yuichi HiyamaClinical Research Center in Hiroshima, Hiroshima University Hospital, Hiroshima 734-8551, Japan.
Yoshihiro KishidaDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.ORCID 0000-0002-5068-6990
Hidehiko TakigawaDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.ORCID 0000-0001-6369-0641
Toshio KuwaiDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.ORCID 0000-0001-9956-1358
Koji ArihiroDepartment of Anatomical Pathology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.
Fumio ShimamotoFaculty of Health Sciences, Hiroshima Cosmopolitan University, Hiroshima 734-0014, Japan.
Shiro OkaDepartment of Gastroenterology, Hiroshima University Hospital, Hiroshima 734-8551, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND/

objectivesColorectal neoplasia developing from ulcerative colitis mucosa (CRNUC) can be divided into ulcerative colitis-associated neoplasia (UCAN) and non-UCAN; however, it is often difficult to distinguish UCAN from non-UCAN during a biopsy diagnosis. We investigated whether a genomic analysis could improve the diagnostic accuracy of UCAN using biopsy specimens.

methodsIn step 1, 14 CRNUCs were used to examine whether the genomic landscape of biopsy and resection specimens matched. In step 2, we investigated the relationship between the genomic landscapes and the pathological diagnosis of 26 CRNUCs. The cancer genome was analyzed by deep sequencing using a custom panel of 27 genes found to be mutated in our previous CRNUC analysis.

resultsIn step 1, of the 27 candidate genes, 14 were mutated. The concordance rate of the pathogenic mutations in these 14 genes between the biopsy and resection specimens was 29% (4/14), while that of the pathogenic mutations in

conclusionsAn evaluation of

Indexed as

biopsysporadic neoplasiaTP53 mutationulcerative colitisulcerative colitis-associated neoplasia

Identifiers

PMID39409892
PMCPMC11475702

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.