Evidence map›Paper›PMID 39435026›Full record

ArticleFrontiers in plant science2024

UV-induced reactive oxygen species and transcriptional control of 3-deoxyanthocyanidin biosynthesis in black sorghum pericarp.

Brooklyn Schumaker, Lauren Mortensen, Robert R Klein, Sabyasachi Mandal, Linda Dykes, Nicholas Gladman, William L Rooney, Byron Burson, Patricia E Klein

Abstract read
In one paragraph

Article in Frontiers in plant science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Brooklyn SchumakerDepartment of Horticultural Sciences, Texas A&M University, College Station, TX, United States.
Lauren MortensenDepartment of Horticultural Sciences, Texas A&M University, College Station, TX, United States.
Robert R KleinUSDA-ARS, Southern Plains Agricultural Research Center, College Station, TX, United States.
Sabyasachi MandalDepartment of Biology, Texas A&M University, College Station, TX, United States.
Linda DykesUSDA-ARS, Cereal Crops Research Unit, Edward T. Schafer Agricultural Research Unit, Fargo, ND, United States.
Nicholas GladmanUSDA-ARS, Robert W. Holley Center for Agriculture and Health, Cornell University, Ithaca, NY, United States.
William L RooneyDepartment of Soil and Crop Sciences, Texas A&M University, College Station, TX, United States.
Byron BursonUSDA-ARS, Southern Plains Agricultural Research Center, College Station, TX, United States.
Patricia E KleinDepartment of Horticultural Sciences, Texas A&M University, College Station, TX, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Black pericarp sorghum has notable value due to the biosynthesis of 3-deoxyanthocyanidins (3-DOAs), a rare class of bioactive polyphenols valued as antioxidant food additives and as bioactive compounds with cytotoxicity to human cancer cells. A metabolic and transcriptomic study was conducted to ascertain the cellular events leading to the activation of 3-DOA biosynthesis in black sorghum pericarp. Prolonged exposure of pericarp during grain maturation to high-fluence ultraviolet (UV) light resulted in elevated levels of reactive oxygen species (ROS) and the activation of 3-DOA biosynthesis in pericarp tissues. In conjunction with 3-DOA biosynthesis was the transcriptional activation of specific family members of early and late flavonoid biosynthesis pathway genes as well as the downstream activation of defense-related pathways. Promoter analysis of genes highly correlated with 3-DOA biosynthesis in black pericarp were enriched in MYB and HHO5/ARR-B motifs. Light microscopy studies of black pericarp tissues suggest that 3-DOAs are predominantly localized in the epicarp and are associated with the cell wall. A working model of UV-induced 3-DOA biosynthesis in black pericarp is proposed that shares features of plant immunity associated with pathogen attack or mechanical wounding. The present model depicts ROS accumulation, the transcriptional activation of receptor kinases and transcription factors (TFs) including NAC, WRKY, bHLH, AP2, and C2H2 Zinc finger domain. This study identified key biosynthetic and regulatory genes of 3-DOA accumulation in black pericarp and provided a deeper understanding of the gene networks and cellular events controlling this tissue-and genotype-specific trait.

Indexed as

3-deoxyanthocyanidingene co-expression networkpericarpROSsorghumtranscriptomicsUV light

Identifiers

PMID39435026
PMCPMC11491397

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.