Evidence map›Paper›PMID 39437158›Full record

ArticleThe journal of physical chemistry. B2024

Acetylation-Dependent Compaction of the Histone H4 Tail Ensemble.

Sophia M Dewing, Tien M Phan, Emma J Kraft, Jeetain Mittal, Scott A Showalter

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sophia M DewingCenter for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, 77 Pollock Rd, University Park, Pennsylvania 16802, United States.ORCID 0000-0001-7744-4177
Tien M PhanArtie McFerrin Department of Chemical Engineering, Texas A&M University, 200 Jack E. Brown Engineering Building, College Station, Texas 77843-3122, United States.ORCID 0000-0002-8608-7359
Emma J KraftDepartment of Chemistry, The Pennsylvania State University, 376 Science Drive, University Park, Pennsylvania 16802, United States.
Jeetain MittalArtie McFerrin Department of Chemical Engineering, Texas A&M University, 200 Jack E. Brown Engineering Building, College Station, Texas 77843-3122, United States.ORCID 0000-0002-9725-6402
Scott A ShowalterCenter for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, 77 Pollock Rd, University Park, Pennsylvania 16802, United States.ORCID 0000-0001-5179-032X

Funding

Computation, Bioinformatics, and Statistics (CBIOS) Training ProgramT32GM102057 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI CHIAROMONTE, FRANCESCA, GIRIRAJAN, SANTHOSH · 2013 to 2022
$2.7M
Multiscale Computational Models to Investigate the Role of Phase Separation in BiologyR35GM153388 · NIGMS · TEXAS ENGINEERING EXPERIMENT STATION · PI Jeetain Mittal · 2024 to 2026
$1.3M
X-ray instrumentation upgrade for single crystal diffraction and solution small angle scatteringS10OD028589 · OD · PENNSYLVANIA STATE UNIVERSITY, THE · PI YENNAWAR, NEELA H. · 2020 to 2020
$600k
Acetyllysine Structure-Function Analysis by 13C Direct-Detect NMR SpectroscopyR21GM137129 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI SHOWALTER, SCOTT A · 2020 to 2021
$416k
NIGMS NIH HHS R21 GM137129NIGMS NIH HHS R35 GM153388NIGMS NIH HHS T32 GM102057NIH HHS S10 OD028589
6 · The paper itself

Abstract

Acetylation of the histone H4 tail (H4Kac) has been established as a significant regulator of chromatin architecture and accessibility; however, the molecular mechanisms that underlie these observations remain elusive. Here, we characterize the ensemble features of the histone H4 tail and determine how they change following acetylation on specific sets of lysine residues. Our comprehensive account is enabled by a robust combination of experimental and computational biophysical methods that converge on molecular details including conformer size, intramolecular contacts, and secondary structure propensity. We find that acetylation significantly alters the chemical environment of basic patch residues (16-20) and leads to tail compaction that is partially mediated by transient intramolecular contacts established between the basic patch and N-terminal amino acids. Beyond acetylation, we identify that the protonation state of H18, which is affected by the acetylation state, is a critical regulator of ensemble characteristics, highlighting the potential for interplay between the sequence context and post-translational modifications to define the ensemble features of intrinsically disordered regions. This study elucidates molecular details that could link H4Kac with the regulation of chromatin architecture, illuminating a small piece of the complex network of molecular mechanisms underlying the histone code hypothesis.

Indexed as

HistonesAcetylationLysineMolecular Dynamics SimulationProtein Processing, Post-TranslationalHistonesLysine

Identifiers

PMID39437158
PMCPMC11533190

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.