Evidence map›Paper›PMID 39439102›Full record

ArticleInfluenza and other respiratory viruses2024

Seasonality and Co-Detection of Respiratory Viral Infections Among Hospitalised Patients Admitted With Acute Respiratory Illness-Valencia Region, Spain, 2010-2021.

George Shirreff, Sandra S Chaves, Laurent Coudeville, Beatriz Mengual-Chuliá, Ainara Mira-Iglesias, Joan Puig-Barberà, Alejandro Orrico-Sanchez, Javier Díez-Domingo, Valencia Hospital Surveillance Network for the Study of Influenza and Other Respiratory Viruses (VAHNSI), Lulla Opatowski and 1 more

Abstract read
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Article in Influenza and other respiratory viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

George ShirreffEpidemiology and Modelling of Antibiotic Evasion (EMAE), Institut Pasteur, Université Paris Cité, Paris, France.ORCID 0000-0002-4654-1254
Sandra S ChavesNew Products & Innovation, Sanofi Vaccines, Lyon, France.
Laurent CoudevilleNew Products & Innovation, Sanofi Vaccines, Lyon, France.
Beatriz Mengual-ChuliáVirology Laboratory, Genomics and Health Area, Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana (FISABIO-Public Health), Valencia, Spain.ORCID 0000-0002-7605-8175
Ainara Mira-IglesiasCIBER-ESP, Instituto de Salud Carlos III, Madrid, Spain.ORCID 0000-0001-6371-8229
Joan Puig-BarberàVaccine Research Area, Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana (FISABIO-Public Health), Valencia, Spain.ORCID 0000-0001-5783-0409
Alejandro Orrico-SanchezCIBER-ESP, Instituto de Salud Carlos III, Madrid, Spain.
Javier Díez-DomingoCIBER-ESP, Instituto de Salud Carlos III, Madrid, Spain.
Valencia Hospital Surveillance Network for the Study of Influenza and Other Respiratory Viruses (VAHNSI)
Lulla OpatowskiEpidemiology and Modelling of Antibiotic Evasion (EMAE), Institut Pasteur, Université Paris Cité, Paris, France.
F Xavier Lopez-LabradorVirology Laboratory, Genomics and Health Area, Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana (FISABIO-Public Health), Valencia, Spain.ORCID 0000-0002-9403-8258

Funding

Agence Nationale de la Recherche ANR-10-LABX-62-IBEIDCIBEResp Network of Excellence, Instituto de Salud Carlos III, SpainFrench National Institute for Health and Medical Research (Inserm)InsermInstitut PasteurSanofiUniversity of Versailles-Saint-Quentin-en-Yvelines/University of Paris-Saclay
6 · The paper itself

Abstract

backgroundRespiratory viruses are known to represent a high burden in winter, yet the seasonality of many viruses remains poorly understood. Better knowledge of co-circulation and interaction between viruses is critical to prevention and management. We use > 10-year active surveillance in the Valencia Region to assess seasonality and co-circulation.

methodsOver 2010-2021, samples from patients hospitalised for acute respiratory illness were analysed using multiplex real-time PCR to test for 9 viruses: influenza, respiratory syncytial virus (RSV), parainfluenza virus (PIV), rhino/enteroviruses (HRV/ENV), metapneumovirus (MPV), bocavirus, adenovirus, SARS-CoV-2 and non-SARS coronaviruses (HCoV). Winter seasonal patterns of incidence were examined. Instances of co-detection of multiple viruses in a sample were analysed and compared with expected values under a crude model of independent circulation.

resultsMost viruses exhibited consistent patterns between years. Specifically, RSV and influenza seasons were clearly defined, peaking in December-February, as did HCoV and SARS-CoV-2. MPV, PIV and HRV/ENV showed less clear seasonality, with circulation outside the observed period. All viruses circulated in January, suggesting any pair had opportunity for co-infection. Multiple viruses were found in 4% of patients, with more common co-detection in children under 5 (9%) than older ages. Influenza co-detection was generally observed infrequently relative to expectation, while RSV co-detections were more common, particularly among young children.

conclusionsWe identify characteristic patterns of viruses associated with acute respiratory hospitalisation during winter. Simultaneous circulation permits extensive co-detection of viruses, particularly in young children. However, virus combinations appear to differ in their rates of co-detection, meriting further study.

Indexed as

CoinfectionHospitalizationRespiratory Tract InfectionsSeasonsVirus DiseasesAcute DiseaseAdolescentAdultAgedAged, 80 and overChildChild, PreschoolFemaleHumansInfantInfant, Newbornco‐detectionco‐infectioninfluenzarespiratory virusrhinovirusRSV respiratory syncytial virusseasonalitysevere acute respiratory syndrome coronavirus 2

Identifiers

PMID39439102
PMCPMC11496384

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.