Evidence map›Paper›PMID 39440837›Full record

ArticleAlzheimer's & dementia : the journal of the Alzheimer's Association2024

Pathway enrichment in genome-wide analysis of longitudinal Alzheimer's disease biomarker endophenotypes.

Thea J Rosewood, Kwangsik Nho, Shannon L Risacher, Shiwei Liu, Sujuan Gao, Li Shen, Tatiana Foroud, Andrew J Saykin, Alzheimer's Disease Neuroimaging Initiative

Abstract read
In one paragraph

Article in Alzheimer's & dementia : the journal of the Alzheimer's Association, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Alzheimer's disease polygenic risk in early- and late-onset Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Article
  3. Review
  4. Article
  5. Pathway enrichment in genome-wide analysis of longitudinal Alzheimer's disease biomarker endophenotypes.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2024
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Thea J RosewoodIndiana Alzheimer's Disease Research Center, Indianapolis, Indiana, USA.ORCID 0000-0001-7025-0222
Kwangsik NhoIndiana Alzheimer's Disease Research Center, Indianapolis, Indiana, USA.
Shannon L RisacherIndiana Alzheimer's Disease Research Center, Indianapolis, Indiana, USA.
Shiwei LiuIndiana Alzheimer's Disease Research Center, Indianapolis, Indiana, USA.
Sujuan GaoIndiana Alzheimer's Disease Research Center, Indianapolis, Indiana, USA.
Li ShenDepartment of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Tatiana ForoudIndiana Alzheimer's Disease Research Center, Indianapolis, Indiana, USA.
Andrew J SaykinIndiana Alzheimer's Disease Research Center, Indianapolis, Indiana, USA.ORCID 0000-0002-1376-8532
Alzheimer's Disease Neuroimaging Initiative

Funding

Project 1U19AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI CLIFFORD R. JACK · 2016 to 2026
$226.7M
Alzheimer's Disease Neuroimaging Initiative - SupplementU01AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WEINER, MICHAEL W · 2004 to 2015
$121.0M
National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
Peripheral and Central Biomarkers of Alzheimer's Disease in Diverse CohortsU19AG074879 · NIA · MAYO CLINIC JACKSONVILLE · PI Mariet Allen · 2023 to 2026
$42.0M
Research Education ComponentP30AG010133 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SAYKIN, ANDREW J · 1991 to 2020
$37.3M
Research Education ComponentP30AG072976 · NIA · INDIANA UNIVERSITY INDIANAPOLIS · PI ANDREW J SAYKIN · 2021 to 2026
$24.1M
Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
Ultrascale Machine Learning to Empower Discovery in Alzheimers Disease BiobanksU01AG068057 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Christos Davatzikos, Heng Huang · 2020 to 2026
$20.7M
Pharmacogenomics of Statin TherapyP50GM115318 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RISCH, NEIL J. · 2015 to 2019
$14.0M
Memory Circuitry in MCI and Early Alzheimer’s Disease Prodrome: Molecular DriversR01AG019771 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SAYKIN, ANDREW J · 2001 to 2021
$6.9M
Systems Genetics Dissection of Non-alcoholic SteatohepatitisR01DK117850 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Aldons Jake Lusis · 2019 to 2026
$4.6M
Leveraging Neuroimaging Biomarkers to Understand the Role of Social Networks in Alzheimer's DiseaseR01AG057739 · NIA · TRUSTEES OF INDIANA UNIVERSITY · PI APOSTOLOVA, LIANA G, PERRY, BREA LOUISE · 2018 to 2022
$3.5M
Department of Defense W81XWH-12-2-0012Indiana Clinical and Translational Sciences InstituteIndiana University Health Indiana University School of Medicine Strategic Neuroscience Research InitiativeNCATS NIH HHS UL1 TR001108NCATS NIH HHS UL1TR001108NIA NIH HHS K01 AG049050NIA NIH HHS K01AG049050NIA NIH HHS P30 AG010133NIA NIH HHS P30 AG072976NIA NIH HHS P30AG072976NIA NIH HHS P30AG10133NIA NIH HHS R01 AG019771NIA NIH HHS R01 AG057739NIA NIH HHS R01AG057739NIA NIH HHS R01 AG061788NIA NIH HHS R01AG061788NIA NIH HHS R01 AG068193NIA NIH HHS R01AG068193NIA NIH HHS R01AG19771NIA NIH HHS R03 AG063250NIA NIH HHS R03AG063250NIA NIH HHS T32 AG071444NIA NIH HHS T32AG071444NIA NIH HHS U01 AG024904NIA NIH HHS U01 AG068057NIA NIH HHS U01AG068057NIA NIH HHS U19 AG024904NIA NIH HHS U19AG024904NIA NIH HHS U19 AG074879NIA NIH HHS U19AG074879NIA NIH HHS U24 AG021886NIA NIH HHS U24AG021886NIDDK NIH HHS R01 DK117850NIGMS NIH HHS P50 GM115318NIGMS NIH HHS P50GM115318NLM NIH HHS R01 LM012535NLM NIH HHS R01LM012535NLM NIH HHS R01 LM013463NLM NIH HHS R01LM013463The Alzheimer's Association
6 · The paper itself

Abstract

introductionThe genetic pathways that influence longitudinal heterogeneous changes in Alzheimer's disease (AD) may provide insight into disease mechanisms and potential therapeutic targets.

methodsLongitudinal endophenotypes from the Alzheimer's Disease Neuroimaging Initiative (ADNI) representing amyloid, tau, neurodegeneration (A/T/N), and cognition were selected. Genome-wide association analysis was performed using a linear mixed model (LMM) approach, followed by gene and pathway enrichment with significant and functionally relevant SNPs.

resultsA total of 33 and 19 statistically significant pathways were identified associating with the intercept and longitudinal trajectory, respectively. The longitudinal intercept pathways represent eight groups: immune, metabolic, cell growth and survival, DNA maintenance, neuronal signaling, RAS/MAPK/ERK signaling pathways, vesicle and lysosomal transport, and transcription modification. Longitudinal trajectory pathways represented six groups: Immune, metabolic, cell signaling, cytoskeleton, and glycosylation. DISCUSSION: Longitudinal enrichment identified pathways that uniquely associate with trajectories of key AD biomarkers and cognition, providing new insight into AD course-related mechanisms and potential new therapeutic targets. HIGHLIGHTS: A systematic genome-wide analysis with longitudinal AD biomarker endophenotypes was performed. Enriched pathways were identified with functionally derived SNP to gene analysis. Fifty-two pathways were associated with longitudinal trajectory and intercept. Many of the identified pathways are specific steps in larger pathways implicated in AD. The identified pathways may provide therapeutic targets and areas for further study.

Indexed as

Alzheimer DiseaseBiomarkersEndophenotypesGenome-Wide Association StudyPolymorphism, Single NucleotideAgedFemaleHumansLongitudinal StudiesMaleBiomarkersendophenotypesgeneticsgenome‐wide association studylongitudinalpathway

Identifiers

PMID39440837
PMCPMC11667536

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.