Evidence map›Paper›PMID 39448615›Full record

ArticleNPJ systems biology and applications2024

Multistability and predominant hybrid phenotypes in a four node mutually repressive network of Th1/Th2/Th17/Treg differentiation.

Atchuta Srinivas Duddu, Elizabeth Andreas, Harshavardhan Bv, Kaushal Grover, Vivek Raj Singh, Kishore Hari, Siddharth Jhunjhunwala, Breschine Cummins, Tomas Gedeon, Mohit Kumar Jolly

Abstract read
In one paragraph

Article in NPJ systems biology and applications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. The synergistic effects of PMJournal of thoracic disease · 2025
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Atchuta Srinivas DudduDepartment of Bioengineering, Indian Institute of Science, Bangalore, 560012, India.
Elizabeth AndreasDepartment of Mathematical Sciences, Montana State University, Bozeman, MT, 59717, USA.
Harshavardhan BvDepartment of Bioengineering, Indian Institute of Science, Bangalore, 560012, India.
Kaushal GroverSchool of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India.
Vivek Raj SinghUndergraduate Program, Indian Institute of Science, Bangalore, 560012, India.ORCID 0009-0004-8876-5864
Kishore HariDepartment of Bioengineering, Indian Institute of Science, Bangalore, 560012, India.
Siddharth JhunjhunwalaDepartment of Bioengineering, Indian Institute of Science, Bangalore, 560012, India.
Breschine CumminsDepartment of Mathematical Sciences, Montana State University, Bozeman, MT, 59717, USA. breschine.cummins@montana.edu.ORCID 0000-0002-3097-5277
Tomas GedeonDepartment of Mathematical Sciences, Montana State University, Bozeman, MT, 59717, USA. tgedeon@montana.edu.
Mohit Kumar JollyDepartment of Bioengineering, Indian Institute of Science, Bangalore, 560012, India. mkjolly@iisc.ac.in.ORCID 0000-0002-6631-2109

Funding

Needle in a haystack: effective search for dynamics across the space of networksR01GM126555 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI MISCHAIKOW, KONSTANTIN · 2017 to 2021
$1.8M
NIGMS NIH HHS R01 GM126555
6 · The paper itself

Abstract

Elucidating the emergent dynamics of cellular differentiation networks is crucial to understanding cell-fate decisions. Toggle switch - a network of mutually repressive lineage-specific transcription factors A and B - enables two phenotypes from a common progenitor: (high A, low B) and (low A, high B). However, the dynamics of networks enabling differentiation of more than two phenotypes from a progenitor cell has not been well-studied. Here, we investigate the dynamics of a four-node network A, B, C, and D inhibiting each other, forming a toggle tetrahedron. Our simulations show that this network is multistable and predominantly allows for the co-existence of six hybrid phenotypes where two of the nodes are expressed relatively high as compared to the remaining two, for instance (high A, high B, low C, low D). Finally, we apply our results to understand naïve CD4

Indexed as

Cell DifferentiationPhenotypeTh17 CellsTh1 CellsT-Lymphocytes, RegulatoryComputer SimulationGene Regulatory NetworksHumansTh2 CellsTranscription FactorsTranscription Factors

Identifiers

PMID39448615
PMCPMC11502801

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.