Evidence map›Paper›PMID 39448896›Full record

ArticleBMC genomics2024

Genome-wide analysis of the SWEET gene family and its response to powdery mildew and leaf spot infection in the common oat (Avena sativa L.).

Yuanbo Pan, Kuiju Niu, Peiqin Miao, Guiqin Zhao, Yuehua Zhang, Zeliang Ju, Jikuan Chai, Juanjuan Yang, Xiaoning Cui, Ran Zhang

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Identification and Expression Pattern Analysis ofInternational journal of molecular sciences · 2025
    Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yuanbo PanCollege of Pratacultural Science, Gansu Agricultural University, Lanzhou, 730070, Gansu, China.
Kuiju NiuCollege of Pratacultural Science, Gansu Agricultural University, Lanzhou, 730070, Gansu, China. niukj@gsau.edu.cn.
Peiqin MiaoCollege of Pratacultural Science, Gansu Agricultural University, Lanzhou, 730070, Gansu, China.
Guiqin ZhaoCollege of Pratacultural Science, Gansu Agricultural University, Lanzhou, 730070, Gansu, China.
Yuehua ZhangNational Center of Pratacultural Technology Innovation (under preparation), Hohhot, 810016, Inner Mongolia, China.
Zeliang JuKey Laboratory of Superior Forage Germplasm in the Qinghai-Tibetan Plateau, Academy of Animal Husbandry and Veterinary Sciences, Qinghai University, Xining, 810016, Qinghai, China.
Jikuan ChaiCollege of Pratacultural Science, Gansu Agricultural University, Lanzhou, 730070, Gansu, China.
Juanjuan YangCollege of Pratacultural Science, Gansu Agricultural University, Lanzhou, 730070, Gansu, China.
Xiaoning CuiCollege of Pratacultural Science, Gansu Agricultural University, Lanzhou, 730070, Gansu, China.
Ran ZhangInstitute of Ecological Protection and Restoration, Grassland Research Center, Chinese Academy of Forestry, National Forestry and Grassland Administration, Beijing, 100091, China.

Funding

Chief Scientist and Program in Gansu Province ,China 23ZDKA013China National Center of Pratacultural Technology Innovation (under preparation) Special Fund for Innovation Platform Construction CCPTZX2023B05National Natural Science Foundation of China 32360342, 32301491
6 · The paper itself

Abstract

The nutritional quality and yield of oats (Avena sativa) are often compromised by plant diseases such as red leaf, powdery mildew, and leaf spot. Sugars Will Eventually be Exported Transporters (SWEETs) are newly identified sugar transporters involved in regulating plant growth and stress responses. However, the roles of SWEET genes in biotic stress responses remain uncharacterized in oats. In this study, 13 AsSWEET genes were identified across nine chromosomes of the oat genome, all of which were predicted to contain seven transmembrane regions. Phylogenetic analysis revealed four clades of AsSWEET proteins, with high homology to SWEET proteins in the Poaceae family. Collinearity analysis demonstrated strong relationships between oat and Zea mays SWEETs. Using subcellular localization prediction tools, AsSWEET proteins were predicted to localize to the plasma membrane. Promoter analysis revealed cis-acting elements associated with light response, growth, and stress regulation. Six AsSWEET proteins were predicted to interact in a network centered on AsSWEET1a and AsSWEET11. Gene expression analysis of two oat varieties, 'ForagePlus' and 'Molasses', indicated significant expression differences in several AsSWEET genes following infection with powdery mildew or leaf spot, including AsSWEET1a, AsSWEET1b, AsSWEET2b, AsSWEET3a, AsSWEET11, and AsSWEET16. These SWEET genes are potential candidates for disease resistance in oats. This study provides a foundation for understanding the regulatory mechanisms of AsSWEET genes, particularly in response to powdery mildew and leaf spot, and offers insights for enhancing oat molecular breeding.

Indexed as

AvenaPhylogenyPlant DiseasesPlant ProteinsAscomycotaDisease ResistanceGene Expression ProfilingGene Expression Regulation, PlantGenome, PlantMultigene FamilyPlant LeavesPromoter Regions, GeneticPlant ProteinsBioinformatics analysisLeaf spotOatPowdery mildewSWEET sugar transporter protein

Identifiers

PMID39448896
PMCPMC11515518

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.