Evidence map›Paper›PMID 39461958›Full record

ArticleNature communications2024

The Dsc ubiquitin ligase complex identifies transmembrane degrons to degrade orphaned proteins at the Golgi.

Yannick Weyer, Sinead I Schwabl, Xuechen Tang, Astha Purwar, Konstantin Siegmann, Angela Ruepp, Theresia Dunzendorfer-Matt, Michael A Widerin, Veronika Niedrist, Noa J M Mutsters and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
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  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Yannick Weyer *Institute of Molecular Biochemistry, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-2612-6774
Sinead I Schwabl *Institute of Molecular Biochemistry, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.
Xuechen Tang *Department of General, Inorganic and Theoretical Chemistry, Center for Molecular Biosciences Innsbruck, University of Innsbruck, Innsbruck, Austria.
Astha PurwarInstitute of Molecular Biochemistry, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.
Konstantin SiegmannInstitute of Molecular Biochemistry, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.
Angela RueppInstitute of Molecular Biochemistry, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0001-5436-6030
Theresia Dunzendorfer-MattInstitute of Molecular Biochemistry, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-1315-6317
Michael A WiderinInstitute of Cell Biology, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.
Veronika NiedristInstitute of Cell Biology, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.
Noa J M MutstersInstitute of Cell Biology, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.ORCID 0009-0001-4051-9638
Maria G TettamantiDepartment of Molecular and Cell Biology, University of Geneva, Geneva, Switzerland.
Sabine WeysInstitute of Cell Biology, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.
Bettina SargInstitute of Medical Biochemistry, Protein Core Facility, Medical University of Innsbruck, Innsbruck, Austria.
Leopold KremserInstitute of Medical Biochemistry, Protein Core Facility, Medical University of Innsbruck, Innsbruck, Austria.
Klaus R LiedlInstitute of Medical Biochemistry, Protein Core Facility, Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-0985-2299
Oliver SchmidtInstitute of Cell Biology, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-7921-4663
David TeisInstitute of Molecular Biochemistry, Biocenter, Medical University of Innsbruck, Innsbruck, Austria. david.teis@i-med.ac.at.ORCID 0000-0002-8181-0253

Funding

Austrian Science Fund (Fonds zur Förderung der Wissenschaftlichen Forschung) 10.55776/DOC82Austrian Science Fund (Fonds zur Förderung der Wissenschaftlichen Forschung) 10.55776/P32161Austrian Science Fund (Fonds zur Förderung der Wissenschaftlichen Forschung) 10.55776/P34907Austrian Science Fund (Fonds zur Förderung der Wissenschaftlichen Forschung) 10.55776/P36187EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 847681Fonds National de la Recherche Luxembourg (National Research Fund) 13571826
6 · The paper itself

Abstract

The Golgi apparatus is essential for protein sorting, yet its quality control mechanisms are poorly understood. Here we show that the Dsc ubiquitin ligase complex uses its rhomboid pseudo-protease subunit, Dsc2, to assess the hydrophobic length of α-helical transmembrane domains (TMDs) at the Golgi. Thereby the Dsc complex likely interacts with orphaned ER and Golgi proteins that have shorter TMDs and ubiquitinates them for targeted degradation. Some Dsc substrates will be extracted by Cdc48 for endosome and Golgi associated proteasomal degradation (EGAD), while others will undergo ESCRT dependent vacuolar degradation. Some substrates are degraded by both, EGAD- or ESCRT pathways. The accumulation of Dsc substrates entails a specific increase in glycerophospholipids with shorter and asymmetric fatty acyl chains. Hence, the Dsc complex mediates the selective degradation of orphaned proteins at the sorting center of cells, which prevents their spreading across other organelles and thereby preserves cellular membrane protein and lipid composition.

Indexed as

Golgi ApparatusMembrane ProteinsProteolysisSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDegronsEndoplasmic ReticulumEndosomal Sorting Complexes Required for TransportGlycerophospholipidsProtein TransportUbiquitin-Protein LigasesEndosomal Sorting Complexes Required for TransportGlycerophospholipidsMembrane ProteinsSaccharomyces cerevisiae ProteinsUbiquitin-Protein Ligases

Identifiers

PMID39461958
PMCPMC11513148

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.