Evidence map›Paper›PMID 39472469›Full record

ArticleScientific reports2024

Non-invasive SARS-CoV-2 RNA detection and human transcriptome analysis using skin surface lipids.

Tetsuya Kuwano, Takayuki Kanno, Minoru Tobiume, Yuichiro Hirata, Harutaka Katano, Michiko Koga, Hiroyuki Nagai, Takeya Tsutsumi, Noritada Yoshikawa, Hiroshi Yotsuyanagi and 15 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Tetsuya KuwanoBiological Science Research, Kao Corporation, 2606 Akabane, Ichikai-machi, Haga-gun, 321- 3497, Tochigi, Japan. kuwano.tetsuya@kao.com.
Takayuki KannoDepartment of Pathology, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku, 162-8640, Tokyo, Japan.
Minoru TobiumeDepartment of Pathology, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku, 162-8640, Tokyo, Japan.
Yuichiro HirataDepartment of Pathology, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku, 162-8640, Tokyo, Japan.
Harutaka KatanoDepartment of Pathology, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku, 162-8640, Tokyo, Japan.
Michiko KogaDivision of Infectious Diseases, Advanced Clinical Research Center, University of Tokyo, Tokyo, Japan.
Hiroyuki NagaiDepartment of Infectious Diseases and Applied Immunology, Hospital of Institute of Medical Science, University of Tokyo, Tokyo, Japan.
Takeya TsutsumiDivision of Infectious Diseases, Advanced Clinical Research Center, University of Tokyo, Tokyo, Japan.
Noritada YoshikawaDepartment of Allergy and Rheumatology, Institute of Medical Science, University of Tokyo, Tokyo, Japan.
Hiroshi YotsuyanagiDivision of Infectious Diseases, Advanced Clinical Research Center, University of Tokyo, Tokyo, Japan.
Satoshi KutsunaDisease Control and Prevention Center, National Center for Global Health and Medicine, Tokyo, Japan.
Yusuke MiyazatoDisease Control and Prevention Center, National Center for Global Health and Medicine, Tokyo, Japan.
Noriko Kinoshita-IwamotoDisease Control and Prevention Center, National Center for Global Health and Medicine, Tokyo, Japan.
Norio OhmagariDisease Control and Prevention Center, National Center for Global Health and Medicine, Tokyo, Japan.
Taiichiro KobayashiDepartment of Infectious Diseases, Tokyo Metropolitan Cancer and Infectious Diseases Center Komagome Hospital, Tokyo, Japan.
Kazuaki FukushimaDepartment of Infectious Diseases, Tokyo Metropolitan Cancer and Infectious Diseases Center Komagome Hospital, Tokyo, Japan.
Masaru TanakaDepartment of Infectious Diseases, Tokyo Metropolitan Cancer and Infectious Diseases Center Komagome Hospital, Tokyo, Japan.
Akifumi ImamuraDepartment of Infectious Diseases, Tokyo Metropolitan Cancer and Infectious Diseases Center Komagome Hospital, Tokyo, Japan.
Yui UedaBiological Science Research, Kao Corporation, 2606 Akabane, Ichikai-machi, Haga-gun, 321- 3497, Tochigi, Japan.
Maeko IwamuraBiological Science Research, Kao Corporation, 2606 Akabane, Ichikai-machi, Haga-gun, 321- 3497, Tochigi, Japan.
Naoto TakadaBiological Science Research, Kao Corporation, 2606 Akabane, Ichikai-machi, Haga-gun, 321- 3497, Tochigi, Japan.
Takayoshi InoueBiological Science Research, Kao Corporation, 2606 Akabane, Ichikai-machi, Haga-gun, 321- 3497, Tochigi, Japan.
Tetsuro MatanoAIDS Research Center, National Institute of Infectious Diseases, Tokyo, Japan.
Ai Kawana-TachikawaAIDS Research Center, National Institute of Infectious Diseases, Tokyo, Japan.
Tadaki SuzukiDepartment of Pathology, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku, 162-8640, Tokyo, Japan. tksuzuki@niid.go.jp.

Funding

Japan Agency for Medical Research and Development JP21fk0108104
6 · The paper itself

Abstract

There have been several reports of skin manifestations in patients with coronavirus disease 2019 (COVID-19). However, it is unclear whether severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA can be detected on the skin surface, including the sebum, of these patients. In this study, SARS-CoV-2 RNA was detected using real-time reverse-transcription polymerase chain reaction (RT-PCR) assay of skin surface lipids (SSLs) collected using an oil-blotting film from the faces of hospitalized patients with COVID-19. Human transcriptome analysis was also performed using the same samples. In facial SSLs of patients with COVID-19, the RT-PCR positivity rate was 84.6% (11/13 samples) within 5 days and 30.4% (7/23 samples) by 6-10 days of symptom onset. In the transcriptome analysis, the most characteristic SSL-RNA profile was the upregulation of interferon-stimulated gene (ISG)-related genes, such as ISG15, IFITM1, and MX1. This study presents an alternative technique using SSLs for non-invasive SARS-CoV-2 RNA detection and simultaneous analysis of human molecular pathogenesis in patients with COVID-19.

Indexed as

COVID-19Gene Expression ProfilingRNA, ViralSARS-CoV-2SkinAdultAgedCytokinesFemaleHumansLipidsMaleMiddle AgedMyxovirus Resistance ProteinsTranscriptomeUbiquitinsCytokinesISG15 protein, humanLipidsMyxovirus Resistance ProteinsRNA, ViralUbiquitinsCOVID-19SARS-CoV-2SebumSkinSkin surface lipidTranscriptome

Identifiers

PMID39472469
PMCPMC11522698

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.