Evidence map›Paper›PMID 39472825›Full record

ArticleBMC genomics2024

Bank vole genomics links determinate and indeterminate growth of teeth.

Zachary T Calamari, Andrew Song, Emily Cohen, Muspika Akter, Rishi Das Roy, Outi Hallikas, Mona M Christensen, Pengyang Li, Pauline Marangoni, Jukka Jernvall and 1 more

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Zachary T CalamariBaruch College, City University of New York, One Bernard Baruch Way, New York, NY, 10010, USA. zachary.calamari@baruch.cuny.edu.
Andrew SongBaruch College, City University of New York, One Bernard Baruch Way, New York, NY, 10010, USA.
Emily CohenBaruch College, City University of New York, One Bernard Baruch Way, New York, NY, 10010, USA.
Muspika AkterBaruch College, City University of New York, One Bernard Baruch Way, New York, NY, 10010, USA.
Rishi Das RoyInstitute of Biotechnology, University of Helsinki, Helsinki, FI-00014, Finland.
Outi HallikasInstitute of Biotechnology, University of Helsinki, Helsinki, FI-00014, Finland.
Mona M ChristensenInstitute of Biotechnology, University of Helsinki, Helsinki, FI-00014, Finland.
Pengyang LiProgram in Craniofacial Biology, Department of Orofacial Sciences, University of California, San Francisco, San Francisco, CA, 94158, USA.
Pauline MarangoniProgram in Craniofacial Biology, Department of Orofacial Sciences, University of California, San Francisco, San Francisco, CA, 94158, USA.
Jukka JernvallInstitute of Biotechnology, University of Helsinki, Helsinki, FI-00014, Finland.
Ophir D KleinProgram in Craniofacial Biology, Department of Orofacial Sciences, University of California, San Francisco, San Francisco, CA, 94158, USA. ophir.klein@cshs.org.

Funding

Harnessing natural stem cell-based strategies for mammalian dental renewalR35DE026602 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KLEIN, OPHIR D · 2016 to 2023
$8.0M
Skeletal Biology and Biomechanics (SBB) CoreP30AR075055 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI EDWARD C HSIAO · 2019 to 2026
$7.1M
Regulation of organogenesis through regional variations in tissue mechanicsR01DE027620 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CAMPAS, OTGER, KLEIN, OPHIR D · 2018 to 2022
$2.3M
Helsingin Yliopisto Doctoral Programme in BiomedicineNational Science Foundation CNS-0958379NIAMS NIH HHS P30 AR075055NIDCR NIH HHS R01 DE027620NIDCR NIH HHS R01-DE027620NIDCR NIH HHS R35 DE026602
6 · The paper itself

Abstract

backgroundContinuously growing teeth are an important innovation in mammalian evolution, yet genetic regulation of continuous growth by stem cells remains incompletely understood. Dental stem cells responsible for tooth crown growth are lost at the onset of tooth root formation. Genetic signaling that initiates this loss is difficult to study with the ever-growing incisor and rooted molars of mice, the most common mammalian dental model species, because signals for root formation overlap with signals that pattern tooth size and shape (i.e., cusp patterns). Bank and prairie voles (Cricetidae, Rodentia, Glires) have evolved rooted and unrooted molars while retaining similar size and shape, providing alternative models for studying roots.

resultsWe assembled a de novo genome of Myodes glareolus, a vole with high-crowned, rooted molars, and performed genomic and transcriptomic analyses in a broad phylogenetic context of Glires (rodents and lagomorphs) to assess differential selection and evolution in tooth forming genes. Bulk transcriptomics comparisons of embryonic molar development between bank voles and mice demonstrated overall conservation of gene expression levels, with species-specific differences corresponding to the accelerated and more extensive patterning of the vole molar. We leverage convergent evolution of unrooted molars across the clade to examine changes that may underlie the evolution of unrooted molars. We identified 15 dental genes with changing synteny relationships and six dental genes undergoing positive selection across Glires, two of which were undergoing positive selection in species with unrooted molars, Dspp and Aqp1. Decreased expression of both genes in prairie voles with unrooted molars compared to bank voles supports the presence of positive selection and may underlie differences in root formation.

conclusionsOur results support ongoing evolution of dental genes across Glires and identify candidate genes for mechanistic studies of root formation. Comparative research using the bank vole as a model species can reveal the complex evolutionary background of convergent evolution for ever-growing molars.

Indexed as

ArvicolinaeGenomicsAnimalsBiological EvolutionEvolution, MolecularGenomeMiceMolarOdontogenesisPhylogenyToothDentalDevelopmentEvolutionGenomeGliresMolarRodentRootSelectionTooth

Identifiers

PMID39472825
PMCPMC11523675

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.