Evidence map›Paper›PMID 39475571›Full record

ArticleScience translational medicine2024

Single-cell transcriptomic and proteomic analysis of Parkinson's disease brains.

Biqing Zhu, Jae-Min Park, Sarah R Coffey, Anthony Russo, I-Uen Hsu, Jiawei Wang, Chang Su, Rui Chang, TuKiet T Lam, Pallavi P Gopal and 5 more

Abstract read
In one paragraph

Article in Science translational medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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  3. Cellular and systemic modifiers of alpha-synuclein proteostasis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Biqing ZhuDepartment of Biostatistics, Yale School of Public Health, New Haven, CT 06510, USA.ORCID 0000-0002-7428-6297
Jae-Min ParkDepartment of Neurology, Yale University School of Medicine, New Haven, CT 06510, USA.ORCID 0000-0002-9770-7197
Sarah R CoffeyDepartment of Neurology, Yale University School of Medicine, New Haven, CT 06510, USA.ORCID 0000-0003-3631-2228
Anthony RussoDepartment of Neurology, Yale University School of Medicine, New Haven, CT 06510, USA.ORCID 0000-0002-0623-6618
I-Uen HsuDepartment of Neuroscience, Yale University School of Medicine, New Haven, CT 06510, USA.ORCID 0000-0002-4089-6601
Jiawei WangDepartment of Biostatistics, Yale School of Public Health, New Haven, CT 06510, USA.ORCID 0000-0003-2627-4897
Chang SuDepartment of Biostatistics, Yale School of Public Health, New Haven, CT 06510, USA.ORCID 0000-0002-8704-1512
Rui ChangDepartment of Neuroscience, Yale University School of Medicine, New Haven, CT 06510, USA.
TuKiet T LamDepartment of Molecular Biophysics and Biochemistry and Keck MS & Proteomics Resource, Yale University, New Haven, CT 06510, USA.ORCID 0000-0002-4850-3462
Pallavi P GopalDepartment of Pathology, Yale University School of Medicine, New Haven, CT 06510, USA.ORCID 0000-0003-4708-8479
Stephen D GinsbergCenter for Dementia Research, Nathan Kline Institute, Orangeburg, NY 10962, USA.ORCID 0000-0002-1797-4288
Hongyu ZhaoDepartment of Biostatistics, Yale School of Public Health, New Haven, CT 06510, USA.ORCID 0000-0003-1195-9607
David A HaflerDepartment of Neurology, Yale University School of Medicine, New Haven, CT 06510, USA.ORCID 0000-0003-4664-535X
Sreeganga S ChandraDepartment of Neurology, Yale University School of Medicine, New Haven, CT 06510, USA.ORCID 0000-0001-9035-1733
Le ZhangDepartment of Neurology, Yale University School of Medicine, New Haven, CT 06510, USA.ORCID 0000-0002-4860-831X

Funding

Yale/NIDA Neuroproteomics Research CenterP30DA018343 · NIDA · YALE UNIVERSITY · PI ANGUS C. NAIRN · 2004 to 2026
$37.1M
Role of Glucosylsphingosine in Parkinson Disease and Dementia with Lewy BodiesRF1NS110354 · NINDS · YALE UNIVERSITY · PI CHANDRA, SREEGANGA S · 2019 to 2022
$2.5M
Immune Network Dysregulation of the Central Nervous System with HIV Persistence and Opioid AbuseDP2DA056169 · NIDA · YALE UNIVERSITY · PI ZHANG, LE · 2022 to 2022
$2.5M
Sex-Specific Single Cell Expression Profiles, Genetic Risk and Drug Responsiveness in Alzheimer's DiseaseR56AG074015 · NIA · YALE UNIVERSITY · PI GHOSH, SOURAV, ROTHLIN, CARLA · 2021 to 2022
$2.5M
6500 QTrap Mass Spectrometer for Yale UniversityS10OD018034 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2014 to 2014
$514k
NIA NIH HHS R56 AG074015NIDA NIH HHS DP2 DA056169NIDA NIH HHS P30 DA018343NIH HHS S10 OD018034NINDS NIH HHS RF1 NS110354
6 · The paper itself

Abstract

Parkinson's disease (PD) is a prevalent neurodegenerative disorder, and recent evidence suggests that pathogenesis may be in part mediated by inflammatory processes, the molecular and cellular architectures of which are largely unknown. To identify and characterize selectively vulnerable brain cell populations in PD, we performed single-nucleus transcriptomics and unbiased proteomics to profile the prefrontal cortex from postmortem human brains of six individuals with late-stage PD and six age-matched controls. Analysis of nearly 80,000 nuclei led to the identification of eight major brain cell types, including elevated brain-resident T cells in PD, each with distinct transcriptional changes in agreement with the known genetics of PD. By analyzing Lewy body pathology in the same postmortem brain tissues, we found that α-synuclein pathology was inversely correlated with chaperone expression in excitatory neurons. Examining cell-cell interactions, we found a selective abatement of neuron-astrocyte interactions and enhanced neuroinflammation. Proteomic analyses of the same brains identified synaptic proteins in the prefrontal cortex that were preferentially down-regulated in PD. By comparing this single-cell PD dataset with a published analysis of similar brain regions in Alzheimer's disease (AD), we found no common differentially expressed genes in neurons but identified many shared differentially expressed genes in glial cells, suggesting that the disease etiologies, especially in the context of neuronal vulnerability, in PD and AD are likely distinct.

Indexed as

BrainParkinson DiseaseProteomicsSingle-Cell AnalysisTranscriptomeAgedAged, 80 and overalpha-SynucleinAlzheimer DiseaseFemaleGene Expression ProfilingHumansLewy BodiesMaleNeuronsPrefrontal Cortexalpha-Synuclein

Identifiers

PMID39475571
PMCPMC12372474

What Socratic holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.