Evidence map›Paper›PMID 39476839›Full record

ArticleCell2024

Stem cell activity-coupled suppression of endogenous retrovirus governs adult tissue regeneration.

Ying Lyu, Soo Jin Kim, Ericka S Humphrey, Richa Nayak, Yinglu Guan, Qingnan Liang, Kun Hee Kim, Yukun Tan, Jinzhuang Dou, Huandong Sun and 18 more

Abstract read
In one paragraph

Article in Cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Trial
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  5. Article
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  9. Article
  10. T cell-intrinsic PRR signaling in immunity and pathology.Acta biochimica et biophysica Sinica · 2026
    Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Ying LyuDepartment of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Soo Jin KimDepartment of Epigenetics and Molecular Carcinogenesis, UT MD Anderson Cancer Center UTHealth Houston, Houston, TX, USA.
Ericka S HumphreyDepartment of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Graduate School of Biomedical Sciences, UT MD Anderson Cancer Center UTHealth Houston, Houston, TX, USA.
Richa NayakDepartment of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Graduate School of Biomedical Sciences, UT MD Anderson Cancer Center UTHealth Houston, Houston, TX, USA.
Yinglu GuanDepartment of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Qingnan LiangDepartment of Bioinformatics and Computational Biology, UT MD Anderson Cancer Center, Houston, TX, USA.
Kun Hee KimGraduate School of Biomedical Sciences, UT MD Anderson Cancer Center UTHealth Houston, Houston, TX, USA; Department of Bioinformatics and Computational Biology, UT MD Anderson Cancer Center, Houston, TX, USA.
Yukun TanDepartment of Bioinformatics and Computational Biology, UT MD Anderson Cancer Center, Houston, TX, USA.
Jinzhuang DouDepartment of Bioinformatics and Computational Biology, UT MD Anderson Cancer Center, Houston, TX, USA.
Huandong SunDepartment of Genome Medicine, UT MD Anderson Cancer Center, Houston, TX, USA.
Xingzhi SongDepartment of Genome Medicine, UT MD Anderson Cancer Center, Houston, TX, USA.
Priyadharsini NagarajanDepartment of Anatomical Pathology, UT MD Anderson Cancer Center, Houston, TX, USA.
Kamryn N Gerner-MauroDepartment of Pulmonary Medicine, UT MD Anderson Cancer Center, Houston, TX, USA; Development, Disease Models, and Therapeutics Graduate Program, Baylor College of Medicine, Houston, TX, USA.
Kevin JinDepartment of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Wiess School of Natural Sciences, Rice University, Houston, TX, USA.
Virginia LiuDepartment of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Wiess School of Natural Sciences, Rice University, Houston, TX, USA.
Rehman H HassanDepartment of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Miranda L JohnsonDepartment of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Lisa P DeliuDepartment of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Yun YouDepartment of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Anurag SharmaElectron Microscopy Resource Center, The Rockefeller University, New York, NY, USA.
H Amalia PasolliElectron Microscopy Resource Center, The Rockefeller University, New York, NY, USA.
Yue LuDepartment of Epigenetics and Molecular Carcinogenesis, UT MD Anderson Cancer Center UTHealth Houston, Houston, TX, USA.
Jianhua ZhangDepartment of Genome Medicine, UT MD Anderson Cancer Center, Houston, TX, USA.
Vakul MohantyDepartment of Bioinformatics and Computational Biology, UT MD Anderson Cancer Center, Houston, TX, USA.
Ken ChenGraduate School of Biomedical Sciences, UT MD Anderson Cancer Center UTHealth Houston, Houston, TX, USA; Department of Bioinformatics and Computational Biology, UT MD Anderson Cancer Center, Houston, TX, USA.
Youn Joo YangDepartment of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Taiping ChenDepartment of Epigenetics and Molecular Carcinogenesis, UT MD Anderson Cancer Center UTHealth Houston, Houston, TX, USA; Graduate School of Biomedical Sciences, UT MD Anderson Cancer Center UTHealth Houston, Houston, TX, USA.
Yejing GeDepartment of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Graduate School of Biomedical Sciences, UT MD Anderson Cancer Center UTHealth Houston, Houston, TX, USA. Electronic address: yge1@mdanderson.org.

Funding

TRANSLATIONAL AND ANALYTICAL CHEMISTRY COREP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI PETER W PISTERS · 1985 to 2026
$279.3M
Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Martha P Mims · 2007 to 2026
$73.9M
Dissecting the role of DNA methylation in controlling retrotransposons and governing adult stem cell fatesR35GM155107 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Yejing Ge · 2024 to 2026
$1.2M
THERMO SCIENTIFIC Q EXACTIVE HF-X HYBRID QUADRUPOLE-ORBITRAP MASS SPECTROMETERS10OD026804 · OD · BAYLOR COLLEGE OF MEDICINE · PI MALOVANNAYA, ANNA · 2019 to 2019
$717k
Dissect stress response in skin epithelial wounding and hyperproliferative disordersK01AR072132 · NIAMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI GE, YEJING · 2018 to 2022
$673k
NCI NIH HHS P30 CA016672NCI NIH HHS P30 CA125123NIAMS NIH HHS K01 AR072132NIGMS NIH HHS R35 GM155107NIH HHS S10 OD026804
6 · The paper itself

Abstract

Mammalian retrotransposons constitute 40% of the genome. During tissue regeneration, adult stem cells coordinately repress retrotransposons and activate lineage genes, but how this coordination is controlled is poorly understood. Here, we observed that dynamic expression of histone methyltransferase SETDB1 (a retrotransposon repressor) closely mirrors stem cell activities in murine skin. SETDB1 ablation leads to the reactivation of endogenous retroviruses (ERVs, a type of retrotransposon) and the assembly of viral-like particles, resulting in hair loss and stem cell exhaustion that is reversible by antiviral drugs. Mechanistically, at least two molecularly and spatially distinct pathways are responsible: antiviral defense mediated by hair follicle stem cells and progenitors and antiviral-independent response due to replication stress in transient amplifying cells. ERV reactivation is promoted by DNA demethylase ten-eleven translocation (TET)-mediated hydroxymethylation and recapitulated by ablating cell fate transcription factors. Together, we demonstrated ERV silencing is coupled with stem cell activity and essential for adult hair regeneration.

Indexed as

Endogenous RetrovirusesHair FollicleHistone-Lysine N-MethyltransferaseRegenerationAdult Stem CellsAnimalsDNA MethylationMiceMice, Inbred C57BLStem CellsVirus ActivationHistone-Lysine N-MethyltransferaseSETDB1 protein, mouseadult stem cellsantiviral responseDNA demethylationendogenous retroviruseshair follicle stem cell exhaustionhair lossheterochromatinreplication stressretrotransposonsskin

Identifiers

PMID39476839
PMCPMC11682924

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.