Evidence map›Paper›PMID 39477921›Full record

ArticleNature communications2024

Cryo-EM reveals structural basis for human AIM/CD5L recognition of polymeric immunoglobulin M.

Qu Chen, Kazuhiro Ishii, Haruka Mori, Akemi Nishijima, Satoko Arai, Toru Miyazaki, Peter B Rosenthal

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Qu Chen *Structural Biology Science Technology Platform, The Francis Crick Institute, London, UK.ORCID 0000-0001-5921-8125
Kazuhiro Ishii *The Institute for AIM Medicine, Tokyo, Japan.ORCID 0009-0001-9222-6271
Haruka MoriThe Institute for AIM Medicine, Tokyo, Japan.
Akemi NishijimaThe Institute for AIM Medicine, Tokyo, Japan.
Satoko AraiThe Institute for AIM Medicine, Tokyo, Japan. arai.satoko@iamaim.jp.ORCID 0000-0002-6145-8686
Toru MiyazakiThe Institute for AIM Medicine, Tokyo, Japan. tm@iamaim.jp.ORCID 0000-0003-3842-4362
Peter B RosenthalStructural Biology of Cells and Viruses Laboratory, The Francis Crick Institute, London, UK. Peter.Rosenthal@crick.ac.uk.ORCID 0000-0002-0387-2862

Funding

Cancer Research UK (CRUK) CC2106Japan Agency for Medical Research and Development (AMED) 23gm0010006h0005Japan Society for the Promotion of Science London (JSPS London) 21H05122MEXT | Japan Society for the Promotion of Science (JSPS) 23H02684RCUK | MRC | Medical Research Foundation CC2106Wellcome TrustWellcome Trust (Wellcome) CC2106
6 · The paper itself

Abstract

Cell surface scavenger receptors contribute to homoeostasis and the response to pathogens and products associated with damage by binding to common molecular features on a wide range of targets. Apoptosis inhibitor of macrophage (AIM/CD5L) is a soluble protein belonging to the scavenger receptor cysteine-rich (SRCR) superfamily that contributes to prevention of a wide range of diseases associated with infection, inflammation, and cancer. AIM forms complexes with IgM pentamers which helps maintain high-levels of circulating AIM in serum for subsequent activation on release from the complex. The structural basis for AIM recognition of IgM as well as other binding targets is unknown. Here we apply cryogenic electron microscopy imaging (cryo-EM) to show how interfaces on both of AIM's C-terminal SRCR domains interact with the Fcμ constant region and J chain components of the IgM core. Both SRCR interfaces are also shown to contribute interactions important for AIM binding to damage-associated molecular patterns (DAMPs).

Indexed as

Immunoglobulin MProtein BindingApoptosis Regulatory ProteinsCryoelectron MicroscopyHumansModels, MolecularProtein DomainsReceptors, ScavengerApoptosis Regulatory ProteinsCD5L protein, humanImmunoglobulin Mpolymeric IgMReceptors, Scavenger

Identifiers

PMID39477921
PMCPMC11525585

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.