Evidence map›Paper›PMID 39482322›Full record

ArticleScientific data2024

Chromosome-scale genome assembly of the mangrove climber species Dalbergia candenatensis.

Miaomiao Shi, Yu Zhang, Huiwen Huang, Shiran Gu, Xiangping Wang, Shijin Li, Zhongtao Zhao, Tieyao Tu

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Miaomiao Shi *State Key Laboratory of Plant Diversity and Specialty Crops/Guangdong Provincial Key Laboratory of Applied Botany/Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
Yu Zhang *State Key Laboratory of Plant Diversity and Specialty Crops/Guangdong Provincial Key Laboratory of Applied Botany/Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
Huiwen HuangState Key Laboratory of Plant Diversity and Specialty Crops/Guangdong Provincial Key Laboratory of Applied Botany/Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
Shiran GuState Key Laboratory of Plant Diversity and Specialty Crops/Guangdong Provincial Key Laboratory of Applied Botany/Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
Xiangping WangState Key Laboratory of Plant Diversity and Specialty Crops/Guangdong Provincial Key Laboratory of Applied Botany/Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
Shijin LiState Key Laboratory of Plant Diversity and Specialty Crops/Guangdong Provincial Key Laboratory of Applied Botany/Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China. lisj@scbg.ac.cn.
Zhongtao ZhaoState Key Laboratory of Plant Diversity and Specialty Crops/Guangdong Provincial Key Laboratory of Applied Botany/Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China. zhzht621@scbg.ac.cn.
Tieyao TuState Key Laboratory of Plant Diversity and Specialty Crops/Guangdong Provincial Key Laboratory of Applied Botany/Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China. tutieyao@scbg.ac.cn.ORCID 0000-0001-7385-008X

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32070222National Natural Science Foundation of China (National Science Foundation of China) 32170232National Natural Science Foundation of China (National Science Foundation of China) 32271613
6 · The paper itself

Abstract

Consisting of trees, climbers and herbs exclusively in the intertidal environments, mangrove forest is one of the most extreme and vulnerable ecosystems of our planet and has long been of great interest for biologists and ecologists. Here, we first assembled the chromosome-scale genome of a climber mangrove plant, Dalbergia candenatensis. The assembled genome size is approximately 474.55 Mb, with a scaffold N50 of 48.1 Mb, a complete BUSCO score of 98.4%, and a high LTR Assembly Index value of 21. The genome contained 283.46 Mb (59.74%) repetitive sequences, and 29,554 protein-coding genes were predicted, of which 87.54% were functionally annotated in five databases. The high-quality genome assembly and annotation presented herein provide a valuable genomic resource that will expedite genomic and evolutionary studies of mangrove plants and facilitate the elucidation of molecular mechanisms underlying the salt- and water-logging-tolerance of mangrove plants.

Indexed as

DalbergiaGenome, PlantChromosomes, PlantMolecular Sequence AnnotationRhizophoraceaeWetlands

Identifiers

PMID39482322
PMCPMC11528007

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.