Evidence map›Paper›PMID 39489317›Full record

ArticleDevelopmental biology2025

The Pax transcription factor EGL-38 links EGFR signaling to assembly of a cell type-specific apical extracellular matrix in the Caenorhabditis elegans vulva.

Helen F Schmidt, Chelsea B Darwin, Meera V Sundaram

Abstract read
In one paragraph

Article in Developmental biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. A Lipocalin and a Hedgehog-related protein are partners in thebioRxiv : the preprint server for biology · 2026
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Helen F SchmidtDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA. Electronic address: schmidth@pennmedicine.upenn.edu.
Chelsea B DarwinDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA.
Meera V SundaramDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA. Electronic address: sundaram@pennmedicine.upenn.edu.

Funding

University of Pennsylvania Postdoctoral Opportunities in Research and TeachingK12GM081259 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Janis K. Burkhardt · 2007 to 2026
$20.1M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Building and shaping the apical extracellular matrixR35GM136315 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Meera Sundaram · 2020 to 2026
$4.7M
Cell-type specific assembly of apical extracellular matricesF32GM151778 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI SCHMIDT, HELEN FRANCES · 2023 to 2024
$146k
NIGMS NIH HHS F32 GM151778NIGMS NIH HHS K12 GM081259NIGMS NIH HHS R35 GM136315NIH HHS P40 OD010440
6 · The paper itself

Abstract

The surface of epithelial tissues is covered by an apical extracellular matrix (aECM). The aECMs of different tissues have distinct compositions to serve distinct functions, yet how a particular cell type assembles the proper aECM is not well understood. We used the cell type-specific matrix of the C. elegans vulva to investigate the connection between cell identity and matrix assembly. The vulva is an epithelial tube composed of seven cell types descending from EGFR/Ras-dependent (1°) and Notch-dependent (2°) lineages. Vulva aECM contains multiple Zona Pellucida domain (ZP) proteins, which are a common component of aECMs across life. ZP proteins LET-653 and CUTL-18 assemble on 1° cell surfaces, while NOAH-1 assembles on a subset of 2° surfaces. All three ZP genes are broadly transcribed, indicating that cell type-specific ZP assembly must be determined by features of the destination cell surface. The paired box (Pax) transcription factor EGL-38 promotes assembly of 1° matrix and prevents inappropriate assembly of 2° matrix, suggesting that EGL-38 promotes expression of one or more ZP matrix organizers. Our results connect the known signaling pathways and various downstream effectors to EGL-38/Pax expression and the ZP matrix component of vulva cell fate execution. We propose that dedicated transcriptional networks may contribute to cell-appropriate assembly of aECM in many epithelial organs.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsErbB ReceptorsExtracellular MatrixSignal TransductionVulvaAnimalsFemaleTranscription FactorsCaenorhabditis elegans ProteinsErbB ReceptorsTranscription FactorsApical extracellular matrixCaenorhabditis elegansPax transcription factorVulvaZona pellucida domain

Identifiers

PMID39489317
PMCPMC11631643

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.