Evidence map›Paper›PMID 39496796›Full record

ArticleNature neuroscience2024

Leveraging deep single-soma RNA sequencing to explore the neural basis of human somatosensation.

Huasheng Yu, Saad S Nagi, Dmitry Usoskin, Yizhou Hu, Jussi Kupari, Otmane Bouchatta, Hanying Yan, Suna Li Cranfill, Mayank Gautam, Yijing Su and 16 more

Erratum issuedAbstract read
In one paragraph

Article in Nature neuroscience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed.

  1. Glial cells in neuropathic pain.Physiological reviews · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Functional and molecular diversity of human C-fibers in pain modulation.Current opinion in supportive and palliative care · 2026
    Review
  8. Targeting GCell reports. Medicine · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Targeting Supramolecular Active Complexes of NaAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors.

Huasheng Yu *Department of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0001-5641-2512
Saad S Nagi *Department of Biomedical and Clinical Sciences, Linköping University, Linköping, Sweden.ORCID http://orcid.org/0000-0001-8773-8232
Dmitry UsoskinDepartment of Medical Biochemistry and Biophysics, Division of Molecular Neurobiology, Karolinska Institute, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-9122-6387
Yizhou HuDepartment of Medical Biochemistry and Biophysics, Division of Molecular Neurobiology, Karolinska Institute, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-2635-0258
Jussi KupariDepartment of Medical Biochemistry and Biophysics, Division of Molecular Neurobiology, Karolinska Institute, Stockholm, Sweden.
Otmane BouchattaDepartment of Biomedical and Clinical Sciences, Linköping University, Linköping, Sweden.ORCID http://orcid.org/0000-0002-1639-0600
Hanying YanDepartment of Biostatistics in Biostatistics and Epidemiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-9227-1742
Suna Li CranfillDepartment of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Mayank GautamDepartment of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-7257-5837
Yijing SuDepartment of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-4146-0068
You LuDepartment of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
James WymerDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Florida, Gainesville, FL, USA.
Max GlanzDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Florida, Gainesville, FL, USA.
Phillip AlbrechtNeuroscience & Pain Research Group, Integrated Tissue Dynamics, LLC, Rensselaer, NY, USA.
Hongjun SongDepartment of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-8720-5310
Guo-Li MingDepartment of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-2517-6075
Stephen ProutyDepartment of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
John SeykoraDepartment of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Hao WuDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-4395-6929
Minghong MaDepartment of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-5027-9623
Andrew MarshallPain Research Institute, Institute of Life Course and Medical Sciences, University of Liverpool, Liverpool, UK.ORCID http://orcid.org/0000-0001-8273-7089
Frank L RiceNeuroscience & Pain Research Group, Integrated Tissue Dynamics, LLC, Rensselaer, NY, USA.
Mingyao LiDepartment of Biostatistics in Biostatistics and Epidemiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-2422-9494
Håkan OlaussonDepartment of Biomedical and Clinical Sciences, Linköping University, Linköping, Sweden. hakan.olausson@liu.se.ORCID http://orcid.org/0000-0002-6319-1786
Patrik ErnforsDepartment of Medical Biochemistry and Biophysics, Division of Molecular Neurobiology, Karolinska Institute, Stockholm, Sweden. patrik.ernfors@ki.se.ORCID http://orcid.org/0000-0002-1140-3986
Wenqin LuoDepartment of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. luow@pennmedicine.upenn.edu.ORCID http://orcid.org/0000-0002-2486-807X

Funding

The Penn Human Precision Pain Center (HPPC): Discovery and Functional Evaluation of Human Primary Somatosensory Neuron Types at Normal and Chronic Pain ConditionsU19NS135528 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI Mingyao Li, Wenqin Luo · 2023 to 2026
$11.2M
Study Design and Data AnalysisP30AR069589 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI Elizabeth Anne Grice · 2016 to 2026
$8.6M
Underpinnings of corneal innervation: anatomical, molecular, and functional studies of corneal sensory afferents in physiologic and pathologic statesU01EY034681 · NEI · UNIVERSITY OF PENNSYLVANIA · PI Vivian Lee, Wenqin Luo · 2022 to 2026
$5.5M
Determine Functions of the Lateral Habenular and Trigeminal High Threshold Mechanoreceptors in Mediating Scratching-induced ResponsesR01NS131209 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI Wenqin Luo · 2023 to 2026
$2.1M
The role of the lateral habenula in central pain and itch processingF31DE029361 · NIDCR · UNIVERSITY OF PENNSYLVANIA · PI LI, SUNA · 2019 to 2022
$115k
Division of Intramural Research, National Institute of Allergy and Infectious Diseases (Division of Intramural Research of the NIAID) P30-AR-069589Knut och Alice Wallenbergs Stiftelse (Knut and Alice Wallenberg Foundation) KAW 2019.0047 and KAW 2019.0487NEI NIH HHS U01 EY034681NIAMS NIH HHS P30 AR069589NIDCR NIH HHS F31 DE029361NINDS NIH HHS R01 NS131209NINDS NIH HHS U19 NS135528Sveriges Läkarförbund (Swedish Medical Association) SLSU.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) U01-EY-034681U.S. Department of Health & Human Services | NIH | National Institute of Dental and Craniofacial Research (NIDCR) F31-DE-029361U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R01-NS-131209U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) U19-NS-135528Vetenskapsrådet (Swedish Research Council) 2019-00761Vetenskapsrådet (Swedish Research Council) 2021-03054Vetenskapsrådet (Swedish Research Council) 2023-01874Vetenskapsrådet (Swedish Research Council) ALF grant (Region Östergötland)
6 · The paper itself

Abstract

The versatility of somatosensation arises from heterogeneous dorsal root ganglion (DRG) neurons. However, soma transcriptomes of individual human (h)DRG neurons-critical information to decipher their functions-are lacking due to technical difficulties. In this study, we isolated somata from individual hDRG neurons and conducted deep RNA sequencing (RNA-seq) to detect, on average, over 9,000 unique genes per neuron, and we identified 16 neuronal types. These results were corroborated and validated by spatial transcriptomics and RNAscope in situ hybridization. Cross-species analyses revealed divergence among potential pain-sensing neurons and the likely existence of human-specific neuronal types. Molecular-profile-informed microneurography recordings revealed temperature-sensing properties across human sensory afferent types. In summary, by employing single-soma deep RNA-seq and spatial transcriptomics, we generated an hDRG neuron atlas, which provides insights into human somatosensory physiology and serves as a foundation for translational work.

Indexed as

Ganglia, SpinalSequence Analysis, RNAAdultAnimalsFemaleHigh-Throughput Nucleotide SequencingHumansMaleNeuronsSensory Receptor CellsTranscriptome

Identifiers

PMID39496796
PMCPMC11614738

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.