Evidence map›Paper›PMID 39497527›Full record

ArticleAnnals of botany2025

Is autophagy always a death sentence? A case study of highly selective cytoplasmic degradation during phloemogenesis.

Kornel M Michalak, Natalia Wojciechowska, Karolina Kułak, Julia Minicka, Andrzej M Jagodziński, Agnieszka Bagniewska-Zadworna

Abstract read
In one paragraph

Article in Annals of botany, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Kornel M MichalakDepartment of General Botany, Institute of Experimental Biology, Faculty of Biology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 6, Poznań 61-614, Poland.ORCID 0000-0001-7631-9323
Natalia WojciechowskaDepartment of General Botany, Institute of Experimental Biology, Faculty of Biology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 6, Poznań 61-614, Poland.
Karolina KułakDepartment of General Botany, Institute of Experimental Biology, Faculty of Biology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 6, Poznań 61-614, Poland.
Julia MinickaDepartment of Virology and Bacteriology, Institute of Plant Protection in Poznań, Węgorka 20, Poznań 60-318, Poland.
Andrzej M JagodzińskiDepartment of Ecology, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, Kórnik 62-035, Poland.
Agnieszka Bagniewska-ZadwornaDepartment of General Botany, Institute of Experimental Biology, Faculty of Biology, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 6, Poznań 61-614, Poland.

Funding

National Science Centre, Poland 2020/39/B/NZ3/00018
6 · The paper itself

Abstract

BACKGROUND AND

aimsThe transformation of sieve elements from meristematic cells, equipped with a full complement of organelles, to specialized transport tubes devoid of a nucleus has long been enigmatic. We hypothesized a strong involvement of various degradation pathways, particularly macroautophagy in this context, emphasizing the importance of autophagic selectivity in the remaining viability of these cells.

methodsExperiments were performed on pioneer roots of Populus trichocarpa cultivated in rhizotrons under field conditions. Through anatomical, ultrastructural and molecular analyses, we delineate the stages of phloemogenesis and the concurrent alterations in the cytoplasmic composition of SEs. KEY

resultsNotably, we observed not only macroautophagic structures, but also the formation of autophagic plastids, the selective degradation of specific organelles, vacuole disruption and the release of vacuolar contents. These events initially lead to localized reductions in cytoplasm density, but the organelle-rich cytoplasmic phase is safeguarded from extensive damage by a membrane system derived from the endoplasmic reticulum. The sieve element ultimately develops into a conduit containing electron-translucent cytoplasm. Eventually, the mature sieve element is a tube filled only by translucent cytoplasm, with sparse organelles tethered to the cell wall.

conclusionsAlthough the activation of programmed cell death pathways was postulated, the persistence of sieve elements indicates that protoplast depletion is meticulously regulated by hitherto unidentified mechanisms. This research elucidates the sequential processes occurring in these cells during phloemogenesis and unveils novel insights into the mechanisms of selective autophagy.

Indexed as

AutophagyCytoplasmPhloemPopulusPlant RootsVacuolesenucleationPhloem developmentplant rootsplastolysomesPopulus trichocarpaselective autophagysieve elements

Identifiers

PMID39497527
PMCPMC11904893

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.