Evidence map›Paper›PMID 39512072›Full record

ReviewExpert review of proteomics2024

Proteomic insights into the extracellular matrix: a focus on proteoforms and their implications in health and disease.

Amanpreet Kaur Bains, Alexandra Naba

Abstract readReview
In one paragraph

Review in Expert review of proteomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Understanding and targeting the tumour matrisome.Nature reviews. Clinical oncology · 2026
    Review
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Amanpreet Kaur BainsDepartment of Physiology and Biophysics, University of Illinois Chicago, Chicago, IL, USA.
Alexandra NabaDepartment of Physiology and Biophysics, University of Illinois Chicago, Chicago, IL, USA.ORCID 0000-0002-4796-5614

Funding

Thinking outside the cell: Leveraging HuBMAP data to build the human ECM atlasU01HG012680 · NHGRI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI GAO, YU, NABA, ALEXANDRA · 2022 to 2025
$2.0M
Mechanisms guiding the fibrillar assembly of SNED1 in the extracellular matrixR01GM148423 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI Alexandra Naba · 2023 to 2026
$1.2M
Enhanced mass-spectrometry-based approaches for in-depth profiling of the cancer extracellular matrixR21CA261642 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI GAO, YU, NABA, ALEXANDRA · 2022 to 2024
$553k
NCI NIH HHS R21 CA261642NHGRI NIH HHS U01 HG012680NIGMS NIH HHS R01 GM148423
6 · The paper itself

Abstract

introductionThe extracellular matrix (ECM) is a highly organized and dynamic network of proteins and glycosaminoglycans that provides critical structural, mechanical, and biochemical support to cells. The functions of the ECM are directly influenced by the conformation of the proteins that compose it. ECM proteoforms, which can result from genetic, transcriptional, and/or post-translational modifications, adopt different conformations and, consequently, confer different structural properties and functionalities to the ECM in both physiological and pathological contexts. AREAS COVERED: In this review, we discuss how bottom-up proteomics has been applied to identify, map, and quantify post-translational modifications ( EXPERT OPINION: In the Expert opinion section, we discuss remaining challenges and opportunities with an emphasis on the importance of devising experimental and computational methods tailored to account for the unique biochemical properties of ECM proteins with the goal of increasing sequence coverage and, hence, accurate ECM proteoform identification.

Indexed as

Extracellular MatrixExtracellular Matrix ProteinsProtein Processing, Post-TranslationalProteomicsAnimalsHumansExtracellular Matrix ProteinsAlternative splicingdegradomicsisoformsmass spectrometrymatrisomepost-translational modificationssequence coveragesingle amino acid variants

Identifiers

PMID39512072
PMCPMC11602344

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.