Evidence map›Paper›PMID 39521940›Full record

ArticleScientific reports2024

Exploring the ceRNA network involving AGAP2-AS1 as a novel biomarker for preeclampsia.

Fan Lu, Ni Zeng, Xiang Xiao, Xingxing Wang, Han Gong, Houkang Lei

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Fan LuDepartment of Obstetrics, Affiliated Hospital of GuiZhou Medical University, Guiyang, Guizhou, China.
Ni ZengDepartment of Hospital infection and control, Affiliated Hospital of GuiZhou Medical University, Guiyang, Guizhou, China.
Xiang XiaoDepartment of Obstetrics, Affiliated Hospital of GuiZhou Medical University, Guiyang, Guizhou, China.
Xingxing WangDepartment of Obstetrics, Affiliated Hospital of GuiZhou Medical University, Guiyang, Guizhou, China.
Han GongDepartment of Obstetrics, Affiliated Hospital of GuiZhou Medical University, Guiyang, Guizhou, China.
Houkang LeiDepartment of Obstetrics, Affiliated Hospital of GuiZhou Medical University, Guiyang, Guizhou, China. lufan158720@gmail.com.

Funding

Affiliated Hospital of Guizhou Medical University projects gyfynsfc[2023]-13Guizhou Provincial Science and Technology Projects ZK[2024]-227Science and Technology Fund of Guizhou Provincial Health Commission gzwkj2023-056
6 · The paper itself

Abstract

Preeclampsia (PE) is an important research subject in obstetrics. Nevertheless, the underlying mechanisms of PE remain elusive. PE-related expression datasets (GSE96983, GSE96984 and GSE24129) were downloaded from the Gene Expression Omnibus (GEO) database. Firstly, the differentially expressed messenger RNAs (DE-mRNAs), DE-microRNA (DE-miRNAs) and DE-long non-coding RNA (DE-lncRNAs) between PE and control cohorts were identified, and the ceRNA network was constructed. Then candidate hub genes were obtained through five algorithms by the protein-protein intersection (PPI) network of the mRNAs. Further, five hub genes were identified by receiver operating characteristic (ROC) curve and gene expression profiles: DAXX, EFNB1, NCOR2, RBBP4 and SOCS1. The function of 5 hub genes was analyzed and the interaction between drugs and hub genes was predicted. A total of 5 small molecule drugs were predicted, namely benzbromarone, 9,10-phenanthrenequinone, chembl312032, insulin and aldesleukin. AGAP2-AS1 was mainly located in exosome and cytoplasm. Agap2-as1-related regulatory subnetworks were extracted from ceRNA networks which included 41 mRNAs, 2 miRNAs and 1 lncRNA, including the regulated relationship pairs AGAP2-AS1-hsa-miR-497-5p-SRPRB, and AGAP2-AS1-hsa-miR-195-5p-RPL36. In summary, we constructed a competitive endogenous RNA (ceRNA) network to identify five potential biomarkers (DAXX, EFNB1, NCOR2, SOCS1 and RBBP4) of PE. The in-depth analysis of the AGAP2-AS1 regulatory network will help to uncover more important molecules closely related to PE and provide a scientific Reference.

Indexed as

BiomarkersGene Regulatory NetworksMicroRNAsPre-EclampsiaRNA, MessengerFemaleGene Expression ProfilingGene Expression RegulationHumansPregnancyProtein Interaction MapsRNA, Competitive EndogenousRNA, Long NoncodingBiomarkersMicroRNAsRNA, Competitive EndogenousRNA, Long NoncodingRNA, MessengerAGAP2-AS1BiomarkersCompeting endogenous RNA networklncRNAPreeclampsia

Identifiers

PMID39521940
PMCPMC11550820

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.