Evidence map›Paper›PMID 39528949›Full record

ArticleBMC plant biology2024

Identification of the new allele ptc1-2 and analysis of the regulatory role of PTC1 gene in rice anther development.

Qing Ye, WenXiang Jiang, XiaoQing Wang, XiaFei Hu, ZeLing Zhang, Zhen Wu, Huang Wang, SiNing Li, Dandan Guo, HaoHua He and 1 more

Abstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Qing Ye *College of Agriculture, Jiangxi Agricultural University, Nanchang, 330045, China.
WenXiang Jiang *College of Agriculture, Jiangxi Agricultural University, Nanchang, 330045, China.
XiaoQing WangCollege of Agriculture, Jiangxi Agricultural University, Nanchang, 330045, China.
XiaFei HuCollege of Agriculture, Jiangxi Agricultural University, Nanchang, 330045, China.
ZeLing ZhangCollege of Agriculture, Jiangxi Agricultural University, Nanchang, 330045, China.
Zhen WuCollege of Agriculture, Jiangxi Agricultural University, Nanchang, 330045, China.
Huang WangCollege of Agriculture, Jiangxi Agricultural University, Nanchang, 330045, China.
SiNing LiCollege of Agriculture, Jiangxi Agricultural University, Nanchang, 330045, China.
Dandan GuoCollege of Agriculture, Jiangxi Agricultural University, Nanchang, 330045, China.
HaoHua HeCollege of Agriculture, Jiangxi Agricultural University, Nanchang, 330045, China. hhhua64@163.com.
Li Fang HuCollege of Agriculture, Jiangxi Agricultural University, Nanchang, 330045, China. lfhu_hn337@163.com.

Funding

Ganpo Talent Support Plan-Major Discipline Academic and Technical Leader Training Project 20243BCE51020Key Project of Jiangxi Provincial Natural Science Foundation 20242BAB26093National Natural Science Foundation of China 32060455,32360477
6 · The paper itself

Abstract

Anther development involves a series of important biological events that are precisely regulated by many genes. Although several important genes involved in rice anther development have been identified, the regulatory network involved in tapetal development and pollen wall formation is still largely unclear. PERSISTENT TAPETAL CELL 1 (PTC1) encodes a PHD-Finger protein, which plays a critical role in the regulation of tapetal cell death and pollen development in rice. Here, we report the isolation and characterization of a new allele ptc1-2 with 2-base deletion in the third exon, causing the absent of the PHD domain due to the sequence change. Cytological analysis revealed delayed tapetal PCD, defective pollen exine formation and abnormal ubisch bodies development. Transcriptome analysis revealed that genes related to pollen wall formation (secondary metabolism, phenylalanine synthesis, and cutin and wax biosynthesis pathways), cell death (cysteine and methionine metabolism and DNA repair pathways), and carbohydrate synthesis (starch and sucrose metabolism pathways) were significantly altered in ptc1-2 mutant. A total of 13 reported anther development genes exhibited significant expression changes in the ptc1-2 mutant. Yeast two-hybrid and BiFC analyses showed that PTC1 could interact with API5, an inhibitor of apoptosis, and the citrin-binding enzyme EDT1. This work is helpful in deepening the understanding of the regulatory network of male reproductive development in rice.

Indexed as

AllelesGene Expression Regulation, PlantOryzaPlant ProteinsPollenFlowersGene Expression ProfilingGenes, PlantPlant ProteinsAntherAPI5EDT1ptc1-2Tapetum

Identifiers

PMID39528949
PMCPMC11552164

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.