Evidence map›Paper›PMID 39532099›Full record

ArticleMolecular cell2024

ARF alters PAF1 complex integrity to selectively repress oncogenic transcription programs upon p53 loss.

Jinli Wang, Nikole L Fendler, Ashutosh Shukla, Shwu-Yuan Wu, Ashwini Challa, Jeon Lee, Lukasz A Joachimiak, John D Minna, Cheng-Ming Chiang, Seychelle M Vos and 1 more

Abstract read
In one paragraph

Article in Molecular cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jinli WangDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX, USA.
Nikole L FendlerMassachusetts Institute of Technology, Department of Biology, Cambridge, MA, USA.
Ashutosh ShuklaDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX, USA.
Shwu-Yuan WuHarold C. Simmons Comprehensive Cancer Center, The University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, TX, USA.
Ashwini ChallaDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX, USA.
Jeon LeeLydia Hill Department of Bioinformatics, The University of Texas Southwestern Medical Center, Dallas, TX, USA.
Lukasz A JoachimiakDepartment of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, TX, USA; Center for Alzheimer's and Neurodegenerative Diseases, Peter O'Donnell Jr. Brain Institute, The University of Texas Southwestern Medical Center, Dallas, TX, USA.
John D MinnaHarold C. Simmons Comprehensive Cancer Center, The University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Pharmacology, The University of Texas Southwestern Medical Center, Dallas, TX, USA; Hamon Center for Therapeutic Oncology Research, The University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Internal Medicine, The University of Texas Southwestern Medical Center, Dallas, TX, USA.
Cheng-Ming ChiangHarold C. Simmons Comprehensive Cancer Center, The University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Pharmacology, The University of Texas Southwestern Medical Center, Dallas, TX, USA.
Seychelle M VosMassachusetts Institute of Technology, Department of Biology, Cambridge, MA, USA; Howard Hughes Medical Institute, Cambridge, MA, USA.
Iván D'OrsoDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX, USA. Electronic address: ivan.dorso@utsouthwestern.edu.

Funding

UNIVERSITY OF TEXAS--SPORE IN LUNG CANCERP50CA070907 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI HEYMACH, JOHN V. · 1996 to 2024
$57.4M
UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Kathryn Ann O'Donnell · 2010 to 2026
$53.7M
Transcriptional regulatory mechanisms shaping HIV proviral fateR01AI114362 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI D'ORSO, IVAN · 2015 to 2024
$4.6M
Opposing Functions of BRD4 Isoforms in Breast CancerR01CA251698 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI CHIANG, CHENG-MING · 2020 to 2024
$2.3M
Towards fully reconstituting mammalian transcription in a test tubeDP2GM146254 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI VOS, SEYCHELLE MONQIUE · 2021 to 2024
$2.2M
Small Compound Inhibitors Targeting HPV Genome ReplicationR01CA288743 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI CHENG-MING CHIANG · 2025 to 2026
$1.3M
Transcriptional regulatory mechanisms shaping HIV proviral fateR37AI114362 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Ivan D'Orso · 2025 to 2026
$1.0M
Delineating the Role of KAP1 in WNT-induced Colorectal CancerR03CA259672 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI D'ORSO, IVAN · 2022 to 2023
$164k
Delineating ARF negative regulation of PAF1C-dependent oncogenic programsR03CA270685 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI D'ORSO, IVAN · 2022 to 2023
$162k
NCI NIH HHS P30 CA142543NCI NIH HHS P50 CA070907NCI NIH HHS R01 CA251698NCI NIH HHS R01 CA288743NCI NIH HHS R03 CA259672NCI NIH HHS R03 CA270685NIAID NIH HHS R01 AI114362NIAID NIH HHS R37 AI114362NIGMS NIH HHS DP2 GM146254
6 · The paper itself

Abstract

The polymerase associated factor 1 (PAF1) complex (PAF1c) promotes RNA polymerase II (RNA Pol II) transcription at the elongation step; however, how PAF1c transcription activity is selectively regulated during cell fate transitions remains poorly understood. Here, we reveal that the alternative reading frame (ARF) tumor suppressor operates at two levels to restrain PAF1c-dependent oncogenic transcriptional programs upon p53 loss in mouse cells. First, ARF assembles into homo-oligomers to bind the PAF1 subunit to promote PAF1c disassembly, consequently dampening PAF1c interaction with RNA Pol II and PAF1c-dependent transcription. Second, ARF targets the RUNX family transcription factor 1 (RUNX1) to selectively tune gene transcription. Consistently, ARF loss triggers RUNX1- and PAF1c-dependent transcriptional activation of pro-growth ligands (growth differentiation factor/bone morphogenetic protein [GDF/BMP]), promoting a cell-intrinsic GDF/BMP-Smad1/5 axis that aberrantly induce cell growth. Notably, pharmacologic inactivation of GDF/BMP signaling and genetic perturbation of RUNX1 significantly attenuate cell proliferation mediated by dual p53 and ARF loss, offering therapeutic utility. Our data underscore the significance of selective ARF-mediated tumor-suppressive functions through a universal transcriptional regulator.

Indexed as

Transcription, GeneticTumor Suppressor Protein p53AnimalsCarcinogenesisCell ProliferationCore Binding Factor Alpha 2 SubunitGene Expression Regulation, NeoplasticHEK293 CellsHumansMiceNuclear ProteinsRNA Polymerase IISignal TransductionTranscription FactorsCore Binding Factor Alpha 2 SubunitNuclear ProteinsPAF1 protein, humanRNA Polymerase IIRunx1 protein, mouseTranscription FactorsTrp53 protein, mouseTumor Suppressor Protein p53ARFCDKN2Acell proliferationp53PAF1RNA polymerase IIRUNXtranscriptiontumorigenesistumor suppressor

Identifiers

PMID39532099
PMCPMC12001331

What Socratic holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.