Evidence map›Paper›PMID 39537590›Full record

ArticleNature communications2024

Charting and probing the activity of ADARs in human development and cell-fate specification.

Amir Dailamy, Weiqi Lyu, Sami Nourreddine, Michael Tong, Joseph Rainaldi, Daniella McDonald, Rebecca Panwala, Alysson Muotri, Michael S Breen, Kun Zhang and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Emerging clinical applications of ADAR based RNA editing.Stem cells translational medicine · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Amir Dailamy *Department of Bioengineering, University of California San Diego, San Diego, CA, USA.
Weiqi Lyu *Department of Bioengineering, University of California San Diego, San Diego, CA, USA.
Sami NourreddineDepartment of Bioengineering, University of California San Diego, San Diego, CA, USA.
Michael TongDepartment of Bioengineering, University of California San Diego, San Diego, CA, USA.
Joseph RainaldiDepartment of Bioengineering, University of California San Diego, San Diego, CA, USA.
Daniella McDonaldDepartment of Bioengineering, University of California San Diego, San Diego, CA, USA.
Rebecca PanwalaDepartment of Bioengineering, University of California San Diego, San Diego, CA, USA.
Alysson MuotriDepartment of Pediatrics and Cellular & Molecular Medicine, University of California San Diego, San Diego, CA, USA.
Michael S BreenIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Kun ZhangDepartment of Bioengineering, University of California San Diego, San Diego, CA, USA.
Prashant MaliDepartment of Bioengineering, University of California San Diego, San Diego, CA, USA. pmali@ucsd.edu.ORCID 0000-0002-3383-1287

Funding

Bridge2AI: Cell Maps for AI (CM4AI) Data Generation ProjectOT2OD032742 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jean-Christophe Bélisle-Pipon, TIMOTHY W CLARK · 2022 to 2026
$21.5M
TR&D 3 - Network Guided Machine LearningP41GM103504 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PICO, ALEXANDER R · 2012 to 2024
$17.3M
Next generation massively multiplexed combinatorial genetic screensR01HG012351 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Trey Ideker, Prashant Mali · 2023 to 2026
$2.7M
UC San Diego Genetics Training ProgramT32GM145427 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BRUCE A HAMILTON · 2022 to 2026
$2.6M
NEURAXIAL AAVS TARGETING DRG CHANNELS INVOLVED IN CHRONIC POST INFLAMMATORY PAINR01NS131560 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TONY L. YAKSH · 2024 to 2026
$1.8M
Leveraging large-scale genomics to dissect A-to-I editing in brain aging and Alzheimer's diseaseR01AG087324 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Michael S Breen · 2024 to 2026
$1.7M
Integrative genomic analysis of adenosine-to-inosine editing in Alzheimer's diseaseR03AG080170 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BREEN, MICHAEL S · 2023 to 2024
$335k
NHGRI NIH HHS R01 HG012351NIA NIH HHS R01 AG087324NIA NIH HHS R03 AG080170NIGMS NIH HHS P41 GM103504NIGMS NIH HHS T32 GM145427NINDS NIH HHS R01 NS131560U.S. Department of Defense (United States Department of Defense) W81XWH-22-1-0401U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) R01HG012351U.S. Department of Health & Human Services | NIH | NIH Office of the Director (OD) OT2OD032742
6 · The paper itself

Abstract

Adenosine deaminases acting on RNA (ADARs) impact diverse cellular processes and pathological conditions, but their functions in early cell-fate specification remain less understood. To gain insights here, we began by charting time-course RNA editing profiles in human organs from fetal to adult stages. Next, we utilized hPSC differentiation to experimentally probe ADARs, harnessing brain organoids as neural specific, and teratomas as pan-tissue developmental models. We show that time-series teratomas faithfully recapitulate fetal developmental trends, and motivated by this, conducted pan-tissue, single-cell CRISPR-KO screens of ADARs in teratomas. Knocking out ADAR leads to a global decrease in RNA editing across all germ-layers. Intriguingly, knocking out ADAR leads to an enrichment of adipogenic cells, revealing a role for ADAR in human adipogenesis. Collectively, we present a multi-pronged framework charting time-resolved RNA editing profiles and coupled ADAR perturbations in developmental models, thereby shedding light on the role of ADARs in cell-fate specification.

Indexed as

Adenosine DeaminaseAdipogenesisCell DifferentiationRNA EditingBrainCRISPR-Cas SystemsHumansOrganoidsRNA-Binding ProteinsSingle-Cell AnalysisTeratomaADAR protein, humanAdenosine DeaminaseRNA-Binding Proteins

Identifiers

PMID39537590
PMCPMC11561244

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.