Evidence map›Paper›PMID 39537752›Full record

ArticleScientific reports2024

Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes.

Liam C O'Connell, Victoria Johnson, Jessica P Otis, Anika K Hutton, Anastasia C Murthy, Mark C Liang, Szu-Huan Wang, Nicolas L Fawzi, Kimberly L Mowry

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Exploring Disordered Regions of Human Spliceosome Proteins.The journal of physical chemistry letters · 2026
    Article
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Liam C O'ConnellDepartment of Molecular Biology, Cell Biology & Biochemistry, Brown University, Providence, RI, 02912, USA.
Victoria JohnsonDepartment of Molecular Biology, Cell Biology & Biochemistry, Brown University, Providence, RI, 02912, USA.
Jessica P OtisDepartment of Molecular Biology, Cell Biology & Biochemistry, Brown University, Providence, RI, 02912, USA.
Anika K HuttonDepartment of Molecular Biology, Cell Biology & Biochemistry, Brown University, Providence, RI, 02912, USA.
Anastasia C MurthyDepartment of Molecular Biology, Cell Biology & Biochemistry, Brown University, Providence, RI, 02912, USA.
Mark C LiangDepartment of Molecular Biology, Cell Biology & Biochemistry, Brown University, Providence, RI, 02912, USA.
Szu-Huan WangDepartment of Molecular Biology, Cell Biology & Biochemistry, Brown University, Providence, RI, 02912, USA.
Nicolas L FawziDepartment of Molecular Biology, Cell Biology & Biochemistry, Brown University, Providence, RI, 02912, USA.
Kimberly L MowryDepartment of Molecular Biology, Cell Biology & Biochemistry, Brown University, Providence, RI, 02912, USA. kimberly_mowry@brown.edu.

Funding

RNA Localization in Xenopus OocytesR01GM071049 · NIGMS · BROWN UNIVERSITY · PI MOWRY, KIMBERLY L. · 2005 to 2018
$4.2M
Residue-by-residue details of FUS protein phase separation and aggregationR01GM147677 · NIGMS · BROWN UNIVERSITY · PI FAWZI, NICOLAS LUX · 2022 to 2025
$1.7M
NIGMS NIH HHS R01 GM071049NIGMS NIH HHS R01 GM147677NIH HHS R01GM071049NIH HHS R01GM147677
6 · The paper itself

Abstract

Proteins containing both intrinsically disordered regions (IDRs) and RNA binding domains (RBDs) can phase separate in vitro, forming bodies similar to cellular biomolecular condensates. However, how IDR and RBD domains contribute to in vivo recruitment of proteins to biomolecular condensates remains poorly understood. Here, we analyzed the roles of IDRs and RBDs in L-bodies, biomolecular condensates present in Xenopus oocytes. We show that a cytoplasmic isoform of hnRNPAB, which contains two RBDs and an IDR, is highly enriched in L-bodies. While both of these domains contribute to hnRNPAB self-association and phase separation in vitro and mediate enrichment into L-bodies in oocytes, neither the RBDs nor the IDR replicate the localization of full-length hnRNPAB. Our results suggest a model where the combined effects of the IDR and RBDs regulate hnRNPAB partitioning into L-bodies. This model likely has widespread applications as proteins containing RBD and IDR domains are common biomolecular condensate residents.

Indexed as

Biomolecular CondensatesIntrinsically Disordered ProteinsOocytesAnimalsHeterogeneous-Nuclear Ribonucleoprotein Group A-BProtein BindingProtein DomainsRNARNA-Binding ProteinsXenopusXenopus laevisXenopus ProteinsHeterogeneous-Nuclear Ribonucleoprotein Group A-BIntrinsically Disordered ProteinsRNARNA-Binding ProteinsXenopus Proteins

Identifiers

PMID39537752
PMCPMC11560939

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.