Evidence map›Paper›PMID 39543803›Full record

ArticleThe New phytologist2025

Phosphorylation-dependent activation of the bHLH transcription factor ICE1/SCRM promotes polarization of the Arabidopsis zygote.

Houming Chen, Feng Xiong, Alexa-Maria Wangler, Torren Bischoff, Kai Wang, Yingjing Miao, Daniel Slane, Rebecca Schwab, Thomas Laux, Martin Bayer

Abstract read
In one paragraph

Article in The New phytologist, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. An AINTEGUMENTA phosphoswitch controls bilateral stem cell activity during secondary growth.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. How parental factors shape the plant embryo.Biochemical Society transactions · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Houming ChenMax Planck Institute for Biology Tübingen, Max-Planck-Ring 5, 72076, Tübingen, Germany.ORCID 0009-0007-8828-2549
Feng XiongSignalling Research Centres BIOSS and CIBSS, Faculty of Biology, University of Freiburg, Schänzlestrasse 1, 79104, Freiburg, Germany.ORCID 0000-0002-6434-4588
Alexa-Maria WanglerZMBP-Center for Plant Molecular Biology, University of Tübingen, Auf der Morgenstelle 32, 72076, Tübingen, Germany.ORCID 0009-0001-1631-0535
Torren BischoffZMBP-Center for Plant Molecular Biology, University of Tübingen, Auf der Morgenstelle 32, 72076, Tübingen, Germany.ORCID 0009-0006-6999-1019
Kai WangMax Planck Institute for Biology Tübingen, Max-Planck-Ring 5, 72076, Tübingen, Germany.ORCID 0000-0002-5370-4170
Yingjing MiaoMax Planck Institute for Biology Tübingen, Max-Planck-Ring 5, 72076, Tübingen, Germany.ORCID 0000-0003-1764-573X
Daniel SlaneMax Planck Institute for Biology Tübingen, Max-Planck-Ring 5, 72076, Tübingen, Germany.ORCID 0000-0003-2948-8188
Rebecca SchwabMax Planck Institute for Biology Tübingen, Max-Planck-Ring 5, 72076, Tübingen, Germany.ORCID 0000-0001-9933-9669
Thomas LauxSignalling Research Centres BIOSS and CIBSS, Faculty of Biology, University of Freiburg, Schänzlestrasse 1, 79104, Freiburg, Germany.ORCID 0000-0001-6659-0515
Martin BayerMax Planck Institute for Biology Tübingen, Max-Planck-Ring 5, 72076, Tübingen, Germany.ORCID 0000-0001-5806-2253

Funding

China Scholarship Council 201806320131Deutsche Forschungsgemeinschaft BA3356/3-1Deutsche Forschungsgemeinschaft BA3356/4-1Deutsche Forschungsgemeinschaft La606/13-2Deutsche Forschungsgemeinschaft La606/19-1Deutsche Forschungsgemeinschaft La606/20-1Deutsche Forschungsgemeinschaft SFB1101/B12
6 · The paper itself

Abstract

In Arabidopsis thaliana, the asymmetric cell division (ACD) of the zygote gives rise to the embryo proper and an extraembryonic suspensor, respectively. This process is controlled by the ERECTA-YODA-MPK3/6 receptor kinase-MAP kinase-signaling pathway, which also orchestrates ACDs in the epidermis. In this context, the bHLH transcription factor ICE1/SCRM is negatively controlled by MPK3/6-directed phosphorylation. However, it is unknown whether this regulatory module is similarly involved in the zygotic ACD. We investigated the function of SCRM in zygote polarization by analyzing the effect of loss-of-function alleles and variants that cannot be phosphorylated by MPK3/6, protein accumulation, and target gene expression. Our results show that SCRM has a critical function in zygote polarization and acts in parallel with the known MPK3/6 target WRKY2 in activating WOX8. Our work further demonstrates that SCRM activity in the early embryo is positively controlled by MPK3/6-mediated phosphorylation. Therefore, the effect of MAP kinase-directed phosphorylation of the same target protein fundamentally differs between the embryo and the epidermis, shedding light on cell type-specific, differential gene regulation by common signaling pathways.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsGene Expression Regulation, PlantZygoteMutationPhosphorylationTranscription FactorsArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsICE1 protein, ArabidopsisTranscription FactorsArabidopsis thalianabHLH transcription factorembryogenesisERECTA‐YODA MAP kinase pathwayICE1/SCRMphosphorylationzygote polarization

Identifiers

PMID39543803
PMCPMC11711944

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.