Evidence map›Paper›PMID 39563814›Full record

ArticleACS medicinal chemistry letters2024

Cyclic Peptide C5aR1 Antagonist Design Using Solution Conformational Analysis Derived from Residual Dipolar Couplings.

Kathleen A Farley, Ye Che, Ricardo Lira, Peter Jones, Nikolaos Papaioannou, Matthew Hayward, Mark E Flanagan, Jonathan Langille, Sidney Liang, Betsy S Pierce and 5 more

Abstract read
In one paragraph

Article in ACS medicinal chemistry letters, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Kathleen A FarleyMedicine Design, Pfizer Inc., 445 Eastern Point Rd, Groton, Connecticut 06340, United States.ORCID https://orcid.org/0000-0001-8935-6852
Ye CheMedicine Design, Pfizer Inc., 445 Eastern Point Rd, Groton, Connecticut 06340, United States.
Ricardo LiraMedicine Design, Pfizer Inc., 445 Eastern Point Rd, Groton, Connecticut 06340, United States.ORCID https://orcid.org/0009-0009-4850-1369
Peter JonesMedicine Design, Pfizer Inc., 1 Portland Street, Cambridge, Massachusetts 02139, United States.
Nikolaos PapaioannouMedicine Design, Pfizer Inc., 1 Portland Street, Cambridge, Massachusetts 02139, United States.ORCID https://orcid.org/0000-0002-2516-8497
Matthew HaywardMedicine Design, Pfizer Inc., 445 Eastern Point Rd, Groton, Connecticut 06340, United States.
Mark E FlanaganMedicine Design, Pfizer Inc., 445 Eastern Point Rd, Groton, Connecticut 06340, United States.
Jonathan LangilleMedicine Design, Pfizer Inc., 445 Eastern Point Rd, Groton, Connecticut 06340, United States.
Sidney LiangMedicine Design, Pfizer Inc., 445 Eastern Point Rd, Groton, Connecticut 06340, United States.
Betsy S PierceMedicine Design, Pfizer Inc., 445 Eastern Point Rd, Groton, Connecticut 06340, United States.
Gregory CiszewskiMedicine Design, Pfizer Inc., 445 Eastern Point Rd, Groton, Connecticut 06340, United States.
Paul BoninMedicine Design, Pfizer Inc., 445 Eastern Point Rd, Groton, Connecticut 06340, United States.
Fabien VincentMedicine Design, Pfizer Inc., 445 Eastern Point Rd, Groton, Connecticut 06340, United States.
Simeon RamseyMedicine Design, Pfizer Inc., 1 Portland Street, Cambridge, Massachusetts 02139, United States.
David HepworthMedicine Design, Pfizer Inc., 1 Portland Street, Cambridge, Massachusetts 02139, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To gain further insight into the conformational properties of small cyclic peptides that bind to the G-protein coupled receptor C5aR1, we report here for the first time the elucidation of three peptide solution conformations using residual dipolar couplings and NMR temperature coefficients. Each of these peptides varies by at least one amino acid, adopts a different intramolecular hydrogen bonding pattern, and has a different solution conformation. The solution conformations were used in combination with a homology structure of C5aR1 as a design template for increasing the potency of peptide leads for the C5a receptor. This study provides a framework for using RDC solution conformations to guide the design of peptide mimetics that emulate the target bound state in solution to minimize the strain energy of the bound conformation and improve potency of the peptide for the target.

Identifiers

PMID39563814
PMCPMC11571007

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.