Evidence map›Paper›PMID 39565059›Full record

ArticleCancer medicine2024

Epigenetic and Immune Profile Characteristics in Sinonasal Undifferentiated Carcinoma.

Hyang Joo Ryu, Chung Lee, Sun Och Yoon

Abstract read
In one paragraph

Article in Cancer medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Hyang Joo RyuDepartment of Pathology, Yonsei University College of Medicine, Severance Hospital, Seoul, Korea.ORCID https://orcid.org/0000-0002-3629-929X
Chung LeeDepartment of Pathology, Yonsei University College of Medicine, Severance Hospital, Seoul, Korea.
Sun Och YoonDepartment of Pathology, Yonsei University College of Medicine, Severance Hospital, Seoul, Korea.ORCID https://orcid.org/0000-0002-5115-1402

Funding

National Research Foundation of Korea NRF-2019R1A2C1002370Yonsei University College of Medicine 6-2022-0074
6 · The paper itself

Abstract

introductionSinonasal undifferentiated carcinoma (SNUC) is a rare and highly aggressive malignancy originating in the nasal cavity and paranasal sinuses. Its pathogenesis and immune characteristics remain poorly understood.

objectivesThis study investigates the molecular aspects of SNUC, focusing on tumorigenesis and immunity.

methodsFor this purpose, spatial transcriptome analysis was employed to compare the gene expression profiles of SNUC tumor cells with those of normal epithelial cells, as well as to compare tumor-infiltrating immune cells with immune cells from normal, tumor-free tissue areas. For validation, next-generation sequencing tests and clinical sample studies were conducted.

resultsSpatial transcriptome analysis revealed notable upregulation of EZH2 and the histone family gene such as H3C2 (H3-clustered histone 2) in SNUC tumor cells. Additionally, gene set enrichment analysis identified significant activations in the histone deacetylase (HDAC) signaling pathway, histone acetyltransferase (HAT) pathway, polycomb repressive complex 2 (PRC2), and DNA methylation pathways. A notable decrease was observed in downregulated genes and pathways, including the mucin family of protein genes, the keratin protein gene, and the mucin glycosylation pathway. Next-generation sequencing did not reveal specific genetic mutations within these pathways, although mutations such as IDH2 R172S were noted. Clinical SNUC tissues confirmed increased immunoexpression of EZH2 and PRC2 markers. Analysis of tumor immunity revealed a characteristic immune cell signature, with a notable predominance of naïve B cells, macrophages, CD8 memory T cells, and Tregs in the SNUC microenvironment, alongside the increased expression of LAG3 in tumor-infiltrating immune cells.

conclusionOur study suggests epigenetic mechanisms, particularly via EZH2, play a crucial role in SNUC carcinogenesis. Furthermore, distinctive immune cell profiles in SNUC point to potential immune-related characteristics of this malignancy.

Indexed as

CarcinomaEnhancer of Zeste Homolog 2 ProteinEpigenesis, GeneticGene Expression Regulation, NeoplasticAgedDNA MethylationFemaleGene Expression ProfilingHigh-Throughput Nucleotide SequencingHumansLymphocytes, Tumor-InfiltratingMaleMaxillary Sinus NeoplasmsMiddle AgedTumor MicroenvironmentEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanEZH2head and neck cancerpolycomb repressive complexessinonasal undifferentiated carcinomaspatial transcriptome analysistumor immunity

Identifiers

PMID39565059
PMCPMC11577451

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.