Evidence map›Paper›PMID 39574629›Full record

ArticlebioRxiv : the preprint server for biology2024

ComFB, a new widespread family of c-di-NMP receptor proteins.

Sherihan Samir, Abdalla A Elshereef, Vikram Alva, Jeanette Hahn, David Dubnau, Michael Y Galperin, Khaled A Selim

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Sherihan SamirInterfaculty Institute of Microbiology and Infection Medicine, Organismic Interactions Department, Cluster of Excellence "Controlling Microbes to Fight Infections", Eberhard Karls University of Tübingen, 72076 Tübingen, Germany.
Abdalla A ElshereefInterfaculty Institute of Microbiology and Infection Medicine, Organismic Interactions Department, Cluster of Excellence "Controlling Microbes to Fight Infections", Eberhard Karls University of Tübingen, 72076 Tübingen, Germany.ORCID 0000-0002-7713-8134
Vikram AlvaDepartment of Protein Evolution, Max Planck Institute for Biology Tübingen, Germany.ORCID 0000-0003-1188-473X
Jeanette HahnPublic Health Research Institute and Department of Microbiology, Biochemistry and Molecular Genetics, New Jersey Medical School, Rutgers University, New Jersey, USA.
David DubnauPublic Health Research Institute and Department of Microbiology, Biochemistry and Molecular Genetics, New Jersey Medical School, Rutgers University, New Jersey, USA.ORCID 0000-0001-9713-6120
Michael Y GalperinNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA.ORCID 0000-0002-2265-5572
Khaled A SelimInterfaculty Institute of Microbiology and Infection Medicine, Organismic Interactions Department, Cluster of Excellence "Controlling Microbes to Fight Infections", Eberhard Karls University of Tübingen, 72076 Tübingen, Germany.ORCID 0000-0002-2974-9483

Funding

Understanding the mechanism of genetic transformationR01GM057720 · NIGMS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI DAVID A DUBNAU, Matthew B Neiditch · 1998 to 2026
$15.4M
Improved protein-DNA models for translated sequence search with profile HMMsR15GM123487 · NIGMS · UNIVERSITY OF MONTANA · PI WHEELER, TRAVIS JOHN · 2017 to 2017
$426k
NIGMS NIH HHS R01 GM057720NIGMS NIH HHS R15 GM123487
6 · The paper itself

Abstract

Cyclic dimeric GMP (c-di-GMP) is a widespread bacterial second messenger that controls a variety of cellular functions, including protein and polysaccharide secretion, motility, cell division, cell development, and biofilm formation, and contributes to the virulence of some important bacterial pathogens. While the genes for diguanylate cyclases and c-di-GMP hydrolases (active or mutated) can be easily identified in microbial genomes, the list of c-di-GMP receptor domains is quite limited, and only two of them, PliZ and MshEN, are found across multiple bacterial phyla. Recently, a new c-di-GMP receptor protein, named CdgR or ComFB, has been identified in cyanobacteria and shown to regulate their cell size and, more recently, natural competence. Sequence and structural analysis indicated that CdgR is part of a widespread ComFB protein family, named after the "late competence development protein ComFB" from

Identifiers

PMID39574629
PMCPMC11581024

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.