Evidence map›Paper›PMID 39576756›Full record

ArticleAnalytical chemistry2024

Design and Validation of Specific Oligonucleotide Probes on Planar Magnetic Biosensors.

Songeun Kim, Jisoo Im, Shan X Wang, Jung-Rok Lee

Abstract read
In one paragraph

Article in Analytical chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Songeun KimDepartment of Mechanical and Biomedical Engineering, Ewha Womans University, Seoul 03760, Republic of Korea.
Jisoo ImDepartment of Mechanical and Biomedical Engineering, Ewha Womans University, Seoul 03760, Republic of Korea.
Shan X WangDepartment of Materials Science and Engineering, Stanford University, Stanford, California 94305, United States.
Jung-Rok LeeDepartment of Mechanical and Biomedical Engineering, Ewha Womans University, Seoul 03760, Republic of Korea.ORCID 0000-0002-3518-3965

Funding

Rapid and affordable magneto-nanosensors for ctDNA-guided lung cancer managementR01CA257843 · NCI · STANFORD UNIVERSITY · PI WANG, SHAN X. · 2021 to 2024
$2.2M
MagSToNE - a magnetic system for kidney stone fragment eliminationR21DK131776 · NIDDK · STANFORD UNIVERSITY · PI LIAO, JOSEPH C, WANG, SHAN X. · 2021 to 2022
$435k
NCI NIH HHS R01 CA257843NIDDK NIH HHS R21 DK131776
6 · The paper itself

Abstract

Planar DNA biosensors employ surface-tethered oligonucleotide probes to capture target molecules for diagnostic applications. To improve the sensitivity and specificity of biosensing, hybridization affinities should be enhanced, and cross-hybridization with off-targets must be minimized. To this end, assays can be designed using the thermodynamic properties of hybridization between probes and on-targets or off-targets based on Gibbs free energies and melting temperatures. However, the nature of heterogeneous hybridization between the probes on the surface and the targets in a solution imposes challenges in predicting precise hybridization affinities and the degree of cross-hybridization due to indeterminable thermodynamic penalties induced by the solid surface and its status. Herein, we suggest practical and convenient guidelines for designing oligonucleotide probes based on data obtained from planar magnetic biosensors and thermodynamic properties calculated by using easily accessible solution-phase prediction. The suggested requirements comprised Gibbs free energy ≥ -7.5 kcal mol

Indexed as

Biosensing TechniquesNucleic Acid HybridizationOligonucleotide ProbesDNAThermodynamicsDNAOligonucleotide Probes

Identifiers

PMID39576756
PMCPMC12588398

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.