Evidence map›Paper›PMID 39578877›Full record

ArticleVirology journal2024

Pathogen isolation and traceability analysis of a fatal case of severe fever with thrombocytopenia syndrome virus (SFTSV) infectious encephalitis in China.

Rongjiao Liu, Fangling He, Shengbao Chen, Juan Wang, Chan Yang, Zhifei Zhan, Yaru Xiong, Liang Cai

Abstract readCase Reports
In one paragraph

Article in Virology journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Rongjiao LiuMicrobiological Laboratory, Hunan Provincial Center for Disease Control and Prevention, Changsha, China.
Fangling HeMicrobiological Laboratory, Hunan Provincial Center for Disease Control and Prevention, Changsha, China.
Shengbao ChenInfectious Disease Prevention and Control Department, Hunan Provincial Center for Disease Control and Prevention, Changsha, China.
Juan WangMicrobiological Laboratory, Hunan Provincial Center for Disease Control and Prevention, Changsha, China.
Chan YangMicrobiological Laboratory, Xiangxi Autonomous Prefecture Center for Disease Control and Prevention, Xiangxi, China.
Zhifei ZhanMicrobiological Laboratory, Hunan Provincial Center for Disease Control and Prevention, Changsha, China.
Yaru XiongBSL-3 Biosafety Laboratory, Hunan Provincial Center for Disease Control and Prevention, Changsha, China.
Liang CaiMicrobiological Laboratory, Hunan Provincial Center for Disease Control and Prevention, Changsha, China. 252626889@qq.com.

Funding

Hunan Natural Science Foundation 2021JJ70010Hunan Natural Science Foundation 2024JJ6265the Hunan Provincial Center for Disease Control and Prevention Qinghe Foundation QHJJ2023001the Hunan Provincial Health Commission General Subject Funding Project W20243067
6 · The paper itself

Abstract

backgroundThe initial clinical symptoms of severe fever with thrombocytopenia syndrome (SFTS) mainly include high fever, thrombocytopenia and gastrointestinal symptoms, and severe patients may suffer from severe complications such as multiple organ failure, which can lead to death. Studies have shown that central nervous system symptoms are associated with severe adverse outcomes of SFTS, but there are few reports on confirmed cases of SFTS encephalitis. This is a special case in which her initial SFTS symptoms were atypical, while the disease deteriorated rapidly after the appearance of encephalitis. The purpose of this study was to report the clinical and epidemiological features of this case, isolate and trace the SFTS virus (SFTSV) strain, identify the genotype of the strain, and speculate on the infection route to provide an important reference for the diagnosis and control of SFTSV.

methodsCerebrospinal fluid and serum samples were collected, multipathogen detection was performed via next-generation sequencing (NGS), and SFTSV virus isolation was performed via inoculation of the samples with Vero cells. The serum of key populations closed to patients, parasitic ticks on the surface of domestic animal bodies and environmentally free ticks were collected for SFTSV monitoring. The whole genomes of the virus strains and positive nucleic acid samples were sequenced and compared with the GenBank reference sequence to construct a phylogenetic analysis tree.

resultsThis patient was diagnosed with SFTSV encephalitis, and the viral strain was successfully isolated. The SFTSV strain is closely related to the Hubei strain HB2017-02, and the SFTSV M and L fragments belong to the B genotype, whereas the M fragments belong to the F genotype. In addition, the similarities of coding sequences of case strain to those of tick-carried SFTSV strain in the residence were more than 99.9%.

conclusionsThe patient was confirmed to have SFTSV-infected encephalitis and died rapidly. The SFTSV strain was of Chinese local origin, and tick bites were the most likely route of infection.

Indexed as

PhlebovirusPhylogenySevere Fever with Thrombocytopenia SyndromeAgedAnimalsChinaChlorocebus aethiopsEncephalitis, ViralFatal OutcomeFemaleGenome, ViralGenotypeHumansRNA, ViralVero CellsRNA, ViralEncephalitisNGS sequencingSFTSVTraceability analysisVirus isolation

Identifiers

PMID39578877
PMCPMC11585235

What Socratic holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.