Evidence map›Paper›PMID 39582099›Full record

ReviewJournal of inherited metabolic disease2025

Human glyoxylate metabolism revisited: New insights pointing to multi-organ involvement with implications for siRNA-based therapies in primary hyperoxaluria.

Ronald J A Wanders, Jaap W Groothoff, Lisa J Deesker, Eduardo Salido, Sander F Garrelfs

Abstract readReview
In one paragraph

Review in Journal of inherited metabolic disease, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Peroxisome Dysfunction and Steatotic Liver Disease.International journal of molecular sciences · 2025
    Review
  9. Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ronald J A WandersDepartment of Pediatric Nephrology, Emma Children's Hospital, Amsterdam, The Netherlands.
Jaap W GroothoffDepartment of Pediatric Nephrology, Emma Children's Hospital, Amsterdam, The Netherlands.
Lisa J DeeskerDepartment of Pediatric Nephrology, Emma Children's Hospital, Amsterdam, The Netherlands.
Eduardo SalidoHospital Universitario de Canarias, Centre for Biomedical Research on rare Diseases (CIBERER), Universidad La Laguna, Tenerife, Spain.
Sander F GarrelfsDepartment of Pediatric Nephrology, Emma Children's Hospital, Amsterdam, The Netherlands.ORCID 0000-0002-6185-2616

Funding

Amsterdam University Medical CentersNierstichting 22OK3035Stichting Metakids 2019-04-UMDStichting Stofwisselkracht
6 · The paper itself

Abstract

Glyoxylate is a toxic metabolite because of its rapid conversion into oxalate, as catalyzed by the ubiquitous enzyme lactate dehydrogenase. This requires the presence of efficient glyoxylate detoxification systems in multiple subcellular compartments, as glyoxylate is produced in peroxisomes, mitochondria, and the cytosol. Alanine glyoxylate aminotransferase (AGT) and glyoxylate reductase/hydroxypyruvate reductase (GRHPR) are the key enzymes involved in glyoxylate detoxification. Bi-allelic mutations in the genes coding for these enzymes cause primary hyperoxaluria type 1 (PH1) and 2 (PH2), respectively. Glyoxylate is derived from various sources, including 4-hydroxyproline, which is degraded in mitochondria, generating pyruvate and glyoxylate, as catalyzed by the mitochondrial enzyme 4-hydroxy-2-oxoglutarate aldolase (HOGA); however, counterintuitively, a defect in HOGA1 is the molecular basis of primary hyperoxaluria type 3 (PH3). Irrespective of its underlying cause, hyperoxaluria in humans leads to nephrocalcinosis, recurrent urolithiasis, and kidney damage, which may culminate in kidney failure requiring combined liver-kidney transplantation in severely affected patients. In the past few years, therapeutic options, especially for primary hyperoxaluria type 1 (PH1), have greatly been improved thanks to the introduction of two RNAi-based therapies that inhibit either the production of glycolate oxidase (lumasiran) or lactate dehydrogenase (nedosiran). While lumasiran only targets PH1 patients, nedosiran was specifically developed to target all three subtypes of PH. Inspired by the findings reported in the literature that nedosiran effectively reduced urinary oxalate excretion in PH1 patients but not in PH2 or PH3 patients, we have now revisited glyoxylate metabolism in humans and performed a thorough literature study which revealed that glyoxylate/oxalate metabolism is not confined to the liver but instead involves multiple different organs. This new view on glyoxylate/oxalate metabolism in humans may well explain the disappointing results of nedosiran in PH2 and PH3, and provides new clues for the future generation of new therapeutic strategies for PH2 and PH3.

Indexed as

GlyoxylatesHyperoxaluria, PrimaryRNA, Small InterferingAlcohol OxidoreductasesHumansHydroxypyruvate ReductaseMitochondriaMutationOxo-Acid-LyasesTransaminases4-hydroxy-2-oxoglutarate aldolaseAlanine-glyoxylate transaminaseAlcohol Oxidoreductasesglyoxylate reductaseGlyoxylatesglyoxylic acidHydroxypyruvate ReductaseOxo-Acid-LyasesRNA, Small InterferingTransaminasesgenetic diseasesglyoxylate‐oxalatehyperoxaluriamitochondriaperoxisomes

Identifiers

PMID39582099
PMCPMC11670150

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.