Evidence map›Paper›PMID 39587091›Full record

ArticleNature communications2024

Mina53 demethylates histone H4 arginine 3 asymmetric dimethylation to regulate neural stem/progenitor cell identity.

Lixiao Zhou, Xingsen Zhao, Jie Sun, Kun Zou, Xiaoli Huang, Liyang Yu, Mingxuan Wu, Yong Wang, Xuekun Li, Wen Yi

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Lixiao Zhou *Departments of Biochemistry and Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, China.
Xingsen Zhao *Institute of Biotechnology, Xianghu Laboratory, Hangzhou, China.ORCID 0000-0003-1721-0859
Jie Sun *Departments of Biochemistry and Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, China.
Kun ZouDepartment of Chemistry, School of Science, Westlake University, Hangzhou, China.
Xiaoli HuangThe Children's Hospital, National Clinical Research Center for Children Health, The Institute of Translational Medicine, School of Medicine, Zhejiang University, Hangzhou, China.
Liyang YuDepartments of Biochemistry and Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, China.
Mingxuan WuDepartment of Chemistry, School of Science, Westlake University, Hangzhou, China.ORCID 0000-0003-4721-0825
Yong WangDepartments of Biochemistry and Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, China.ORCID 0000-0001-9156-0377
Xuekun LiThe Children's Hospital, National Clinical Research Center for Children Health, The Institute of Translational Medicine, School of Medicine, Zhejiang University, Hangzhou, China. xuekun_li@zju.edu.cn.ORCID 0000-0002-6985-6363
Wen YiDepartments of Biochemistry and Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, China. wyi@zju.edu.cn.ORCID 0000-0002-4257-3355

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arginine methylation of histones plays a critical role in regulating gene expression. The writers (methyltransferases) and readers of methylarginine marks are well-known, but the erasers-arginine demethylases-remain mysterious. Here we identify Myc-induced nuclear antigen 53 (Mina53), a jumonji C domain containing protein, as an arginine demethylase for removing asymmetric di-methylation at arginine 3 of histone H4 (H4R3me2a). Using a photoaffinity capture method, we first identify Mina53 as an interactor of H4R3me2a. Biochemical assays in vitro and in cells characterize the arginine demethylation activity of Mina53. Molecular dynamics simulations provide further atomic-level evidence that Mina53 acts on H4R3me2a. In a transgenic mouse model, specific Mina53 deletion in neural stem/progenitor cells prevents H4R3me2a demethylation at distinct genes clusters, dysregulating genes important for neural stem/progenitor cell proliferation and differentiation, and consequently impairing the cognitive function of mice. Collectively, we identify Mina53 as a bona fide H4R3me2a eraser, expanding the understanding of epigenetic gene regulation.

Indexed as

ArginineHistonesNeural Stem CellsAnimalsCell DifferentiationCell ProliferationDemethylationHEK293 CellsHumansJumonji Domain-Containing Histone DemethylasesMaleMethylationMiceMice, TransgenicMolecular Dynamics SimulationArginineHistonesJumonji Domain-Containing Histone Demethylases

Identifiers

PMID39587091
PMCPMC11589143

What Socratic holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.