Evidence map›Paper›PMID 39589935›Full record

ArticleThe Plant cell2024

Maize unstable factor for orange1 encodes a nuclear protein that affects redox accumulation during kernel development.

Debamalya Chatterjee, Ziru Zhang, Pei-Yu Lin, Po-Hao Wang, Gurpreet K Sidhu, Neela H Yennawar, Jo-Wei Allison Hsieh, Pao-Yang Chen, Rentao Song, Blake C Meyers and 1 more

Abstract read
In one paragraph

Article in The Plant cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Identification of a novel locus qGW12/OsPUB23 regulating grain shape and weight in rice (Oryza sativa L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Debamalya ChatterjeeDepartment of Plant Science, The Pennsylvania State University, University Park, PA 16802, USA.ORCID 0000-0002-5693-3091
Ziru ZhangNational Center for Maize Improvement, China Agricultural University, Beijing 100083, China.ORCID 0009-0003-7532-8529
Pei-Yu LinInstitute of Plant and Microbial Biology, Academia Sinica, Nankang, Taipei 11529, Taiwan.ORCID 0000-0003-0255-5467
Po-Hao WangDepartment of Plant Science, The Pennsylvania State University, University Park, PA 16802, USA.ORCID 0000-0001-6370-9023
Gurpreet K SidhuDepartment of Plant Science, The Pennsylvania State University, University Park, PA 16802, USA.ORCID 0000-0001-5347-3547
Neela H YennawarX-Ray Crystallography Facility, The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA.ORCID 0000-0001-7278-659X
Jo-Wei Allison HsiehInstitute of Plant and Microbial Biology, Academia Sinica, Nankang, Taipei 11529, Taiwan.ORCID 0000-0001-7017-3853
Pao-Yang ChenInstitute of Plant and Microbial Biology, Academia Sinica, Nankang, Taipei 11529, Taiwan.ORCID 0000-0002-7402-3075
Rentao SongNational Center for Maize Improvement, China Agricultural University, Beijing 100083, China.ORCID 0000-0003-1810-9875
Blake C MeyersThe Donald Danforth Plant Science Center, St. Louis, MO 63132, USA.ORCID 0000-0003-3436-6097
Surinder ChopraDepartment of Plant Science, The Pennsylvania State University, University Park, PA 16802, USA.ORCID 0000-0002-2614-4964

Funding

Wyatt SEC-MALS systemS10OD030490 · OD · PENNSYLVANIA STATE UNIVERSITY, THE · PI YENNAWAR, NEELA H. · 2021 to 2021
$273k
Department of Plant ScienceICARIndian Council of Agricultural ResearchNational Science and Technology Council of Taiwan 109-2313-B-001-009-MY3National Science Foundation 1051654NIH HHS S10 OD030490NIH HHS S10-OD030490-01Penn State University
6 · The paper itself

Abstract

The basal endosperm transfer layer (BETL) of the maize (Zea mays L.) kernel is composed of transfer cells for nutrient transport to nourish the developing kernel. To understand the spatiotemporal processes required for BETL development, we characterized 2 unstable factor for orange1 (Zmufo1) mutant alleles. The BETL defects in these mutants were associated with high levels of reactive oxygen species, oxidative DNA damage, and cell death. Interestingly, antioxidant supplementation in in vitro cultured kernels alleviated the cellular defects in mutants. Transcriptome analysis of the loss-of-function Zmufo1 allele showed differential expression of tricarboxylic acid cycle, redox homeostasis, and BETL-related genes. The basal endosperms of the mutant alleles had high levels of acetyl-CoA and elevated histone acetyltransferase activity. The BETL cell nuclei showed reduced electron-dense regions, indicating sparse heterochromatin distribution in the mutants compared with wild-type. Zmufo1 overexpression further reduced histone methylation marks in the enhancer and gene body regions of the pericarp color1 (Zmp1) reporter gene. Zmufo1 encodes an intrinsically disordered nuclear protein with very low sequence similarity to known proteins. Yeast two-hybrid and luciferase complementation assays established that ZmUFO1 interacts with proteins that play a role in chromatin remodeling, nuclear transport, and transcriptional regulation. This study establishes the critical function of Zmufo1 during basal endosperm development in maize kernels.

Indexed as

EndospermGene Expression Regulation, PlantOxidation-ReductionPlant ProteinsZea maysMutationNuclear ProteinsReactive Oxygen SpeciesSeedsNuclear ProteinsPlant ProteinsReactive Oxygen Species

Identifiers

PMID39589935
PMCPMC11663571

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.