Evidence map›Paper›PMID 39595571›Full record

ArticleBiomolecules2024

Single-Cell RNA-Seq Analysis Links DNMT3B and PFKFB4 Transcriptional Profiles with Metastatic Traits in Hepatoblastoma.

Christophe Desterke, Raquel Francés, Claudia Monge, Agnès Marchio, Pascal Pineau, Jorge Mata-Garrido

Erratum issuedAbstract read
In one paragraph

Article in Biomolecules, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Insights into the mechanisms of angiogenesis in hepatoblastoma.Frontiers in cell and developmental biology · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Christophe DesterkeFaculté de Médecine du Kremlin Bicêtre, Université Paris-Sud, Université Paris-Saclay, 94270 Le Kremlin-Bicêtre, France.
Raquel FrancésCell and Tissue Biology Group, Anatomy and Cell Biology Department, University of Cantabria-IDIVAL, 39011 Santander, SpainORCID 0000-0003-1428-4852
Claudia MongeInternational Joint Laboratory of Molecular Anthropological Oncology (LOAM), IRD, INEN, Lima 15038, PeruORCID 0000-0002-1215-5857
Agnès MarchioInternational Joint Laboratory of Molecular Anthropological Oncology (LOAM), IRD, INEN, Lima 15038, Peru
Pascal PineauInternational Joint Laboratory of Molecular Anthropological Oncology (LOAM), IRD, INEN, Lima 15038, PeruORCID 0000-0002-9407-1592
Jorge Mata-GarridoCell and Tissue Biology Group, Anatomy and Cell Biology Department, University of Cantabria-IDIVAL, 39011 Santander, SpainORCID 0009-0004-5726-8814

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatoblastoma is the most common primary liver cancer in children. Poor outcomes are primarily associated with patients who have distant metastases. Using the Mammalian Metabolic Enzyme Database, we investigated the overexpression of metabolic enzymes in hepatoblastoma tumors compared to noncancerous liver tissue in the GSE131329 transcriptome dataset. For the overexpressed enzymes, we applied ElasticNet machine learning to assess their predictive value for metastasis. A metabolic expression score was then computed from the significant enzymes and integrated into a clinical-biological logistic regression model. Forty-one overexpressed enzymes distinguished hepatoblastoma tumors from noncancerous liver tissues. Eighteen of these enzymes predicted metastasis status with an AUC of 0.90, demonstrating 85.7% sensitivity and 92.3% specificity. ElasticNet machine learning identified

Indexed as

DNA Methyltransferase 3BHepatoblastomaLiver NeoplasmsPhosphofructokinase-2ChildChild, PreschoolDNA (Cytosine-5-)-MethyltransferasesFemaleGene Expression Regulation, NeoplasticHumansMaleNeoplasm MetastasisRNA-SeqSingle-Cell Gene Expression AnalysisTranscriptomeDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BPFKFB4 protein, humanPhosphofructokinase-2CHIC riskDNA methylationepigeneticsglycolysishepatoblastomametabolismmetastasistranscriptome

Identifiers

PMID39595571
PMCPMC11591731

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.