Evidence map›Paper›PMID 39606728›Full record

ArticleArXiv2025

JESTR: Joint Embedding Space Technique for Ranking Candidate Molecules for the Annotation of Untargeted Metabolomics Data.

Apurva Kalia, Yan Zhou Chen, Dilip Krishnan, Soha Hassoun

Abstract readPreprint
In one paragraph

Article in ArXiv, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Apurva KaliaDepartment of Computer Science, Tufts University, Medford, MA 02155, USA.
Yan Zhou ChenDepartment of Computer Science, Tufts University, Medford, MA 02155, USA.
Dilip KrishnanGoogle Research.
Soha HassounDepartment of Computer Science, Tufts University, Medford, MA 02155, USA.

Funding

Deep Learning Models for Metabolomics AnalysisR35GM148219 · NIGMS · TUFTS UNIVERSITY MEDFORD · PI Soha Hassoun · 2023 to 2026
$1.4M
NIGMS NIH HHS R35 GM148219
6 · The paper itself

Abstract

Motivation: A major challenge in metabolomics is annotation: assigning molecular structures to mass spectral fragmentation patterns. Despite recent advances in molecule-to-spectra and in spectra-to-molecular fingerprint prediction (FP), annotation rates remain low. Results: We introduce in this paper a novel tool (JESTR) for annotation. Unlike prior approaches that

Identifiers

PMID39606728
PMCPMC11601792

What Socratic holds

Textmetadata
LicenceCC BY-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.