Evidence map›Paper›PMID 39609471›Full record

ArticleNature communications2024

COVID-19 progression and convalescence in common variable immunodeficiency patients show dysregulated adaptive immune responses and persistent type I interferon and inflammasome activation.

Javier Rodríguez-Ubreva, Josep Calafell-Segura, Celia L Calvillo, Baerbel Keller, Laura Ciudad, Louis-François Handfield, Carlos de la Calle-Fabregat, Gerard Godoy-Tena, Eduardo Andrés-León, Regina Hoo and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. CD4Sensors (Basel, Switzerland) · 2026
    Pooled it
  2. Review
  3. Elevated IL-10 is Linked With the Expansion of T-betJournal of clinical immunology · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. The diversity of CD8Nature reviews. Immunology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Javier Rodríguez-Ubreva *Epigenetics and Immune Disease Group, Josep Carreras Research Institute (IJC), 08916 Badalona, Barcelona, Spain. jrodriguez@carrerasresearch.org.ORCID 0000-0003-4707-4536
Josep Calafell-Segura *Epigenetics and Immune Disease Group, Josep Carreras Research Institute (IJC), 08916 Badalona, Barcelona, Spain.ORCID 0000-0002-0173-8221
Celia L Calvillo *Epigenetics and Immune Disease Group, Josep Carreras Research Institute (IJC), 08916 Badalona, Barcelona, Spain.
Baerbel Keller *Department of Rheumatology and Clinical Immunology, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Laura CiudadEpigenetics and Immune Disease Group, Josep Carreras Research Institute (IJC), 08916 Badalona, Barcelona, Spain.
Louis-François HandfieldWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.
Carlos de la Calle-FabregatEpigenetics and Immune Disease Group, Josep Carreras Research Institute (IJC), 08916 Badalona, Barcelona, Spain.ORCID 0000-0002-3026-3069
Gerard Godoy-TenaEpigenetics and Immune Disease Group, Josep Carreras Research Institute (IJC), 08916 Badalona, Barcelona, Spain.ORCID 0000-0003-3832-5794
Eduardo Andrés-LeónInstituto de Parasitología y Biomedicina López-Neyra, Consejo Superior de Investigaciones Científicas (IPBLN-CSIC), Granada, Spain.ORCID 0000-0002-0621-9914
Regina HooWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.
Tarryn PorterWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0002-6063-0659
Elena PrigmoreWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0001-8870-0316
Maike HofmannDepartment of Medicine II, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID 0000-0001-8410-8833
Annegrit DeckerDepartment of Medicine II, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Javier MartínInstituto de Parasitología y Biomedicina López-Neyra, Consejo Superior de Investigaciones Científicas (IPBLN-CSIC), Granada, Spain.ORCID 0000-0002-2202-0622
Roser Vento-TormoWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK. rv4@sanger.ac.uk.ORCID 0000-0002-9870-8474
Klaus WarnatzDepartment of Rheumatology and Clinical Immunology, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany. klaus.warnatz@uniklinik-freiburg.de.ORCID 0000-0002-1172-865X
Esteban BallestarEpigenetics and Immune Disease Group, Josep Carreras Research Institute (IJC), 08916 Badalona, Barcelona, Spain. eballestar@carrerasresearch.org.ORCID 0000-0002-1400-2440

Funding

Wellcome TrustWellcome Trust (Wellcome) 206194 and 108413/A/15/D
6 · The paper itself

Abstract

Common variable immunodeficiency (CVID) is the most prevalent primary immunodeficiency, marked by hypogammaglobulinemia, poor antibody responses, and increased infection susceptibility. The COVID-19 pandemic provided a unique opportunity to study the effects of prolonged viral infections on the immune responses of CVID patients. Here we use single-cell RNA-seq and spectral flow cytometry of peripheral blood samples before, during, and after SARS-CoV-2 infection showing that COVID-19 CVID patients display a persistent type I interferon signature at convalescence across immune compartments. Alterations in adaptive immunity include sustained activation of naïve B cells, increased CD21

Indexed as

Adaptive ImmunityCommon Variable ImmunodeficiencyConvalescenceCOVID-19InflammasomesInterferon Type ISARS-CoV-2AdultB-LymphocytesCD8-Positive T-LymphocytesDisease ProgressionFemaleHumansKiller Cells, NaturalMaleMiddle AgedInflammasomesInterferon Type I

Identifiers

PMID39609471
PMCPMC11605083

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.