Evidence map›Paper›PMID 39613845›Full record

ArticleScientific reports2024

Identification of novel nutrient sensitive human yolk sac functions required for embryogenesis.

Marina White, Jayden Arif-Pardy, Enrrico Bloise, Kristin L Connor

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Marina WhiteDepartment of Health Sciences, Carleton University, Ottawa, ON, Canada.
Jayden Arif-PardyDepartment of Health Sciences, Carleton University, Ottawa, ON, Canada.
Enrrico BloiseDepartamento de Morfologia, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil.
Kristin L ConnorDepartment of Health Sciences, Carleton University, Ottawa, ON, Canada. kristin.connor@carleton.ca.

Funding

CIHR PJT-175161Conselho Nacional de Desenvolvimento Científico e Tecnológico 310489/2023-7Fundação de Amparo à Pesquisa do Estado de Minas Gerais APQ-00338-18
6 · The paper itself

Abstract

The human yolk sac (hYS) is essential for embryo nutrient biosynthesis/transport and development. However, there lacks a comprehensive study of hYS nutrient-gene interactions. Here we performed a secondary analysis of hYS transcript profiles (n = 9 samples) to identify nutrient-sensitive hYS genes and regulatory networks, including those that associate with adverse perinatal phenotypes with embryonic origins. Overall, 14.8% highly expressed hYS genes are nutrient-sensitive; the most common nutrient cofactors for hYS genes are metals and B vitamins. Functional analysis of highly expressed hYS genes reveals that nutrient-sensitive hYS genes are more likely to be involved in metabolic functions than hYS genes that are not nutrient-sensitive. Through nutrient-sensitive gene network analysis, we find that four nutrient-sensitive transcription regulators in the hYS (with zinc and/or magnesium cofactors) are predicted to collectively regulate 30.9% of highly expressed hYS genes. Lastly, we identify 117 nutrient-sensitive hYS genes that associate with an adverse perinatal outcome with embryonic origins. Among these, the greatest number of nutrient-sensitive hYS genes are linked to congenital heart defects (n = 54 genes), followed by microcephaly (n = 37). Collectively, our study characterises nutrient-sensitive hYS functions and improves understanding of the ways in which nutrient-gene interactions in the hYS may influence both typical and pathological development.

Indexed as

Embryonic DevelopmentGene Regulatory NetworksNutrientsYolk SacFemaleGene Expression Regulation, DevelopmentalHumansTranscriptomeNutrientsCongenital anomaliesHuman yolk sacNutrient bioavailability

Identifiers

PMID39613845
PMCPMC11607434

What Socratic holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.