Evidence map›Paper›PMID 39642330›Full record

ArticleBlood2025

A new severe congenital neutropenia syndrome associated with autosomal recessive COPZ1 mutations.

Natalia Borbaran Bravo, Ekaterina Deordieva, Larissa Doll, Mohammad ElGamacy, Benjamin Dannenmann, Joana Azevedo, Alberto Iannuzzo, Selket Delafontaine, Moritz Lehners, Marius Kolodziej and 19 more

Abstract readCase Reports
In one paragraph

Article in Blood, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. COPI Coatomer Regulates Several Steps of HDL Metabolism.Arteriosclerosis, thrombosis, and vascular biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

29 authors.

Natalia Borbaran BravoDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.ORCID 0000-0001-5987-3023
Ekaterina DeordievaDepartment of Immunology, Dmitry Rogachev National Medical Research Center of Pediatric Hematology, Oncology and Immunology, Moscow, Russia.ORCID 0000-0002-8208-2075
Larissa DollDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.
Mohammad ElGamacyDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.ORCID 0000-0002-3446-8774
Benjamin DannenmannDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.ORCID 0000-0001-9850-8854
Joana AzevedoHematology Department, Coimbra Hospital and University Centre, Coimbra, Portugal.ORCID 0000-0002-4172-4537
Alberto IannuzzoUniversité Paris Cité, French National Centre for Scientific Research, INSERM, Institut Cochin, Paris, France.ORCID 0000-0001-8053-2362
Selket DelafontaineDepartment of Microbiology, Immunology, and Transplantation, Laboratory for Inborn Errors of Immunity, KU Leuven, Leuven, Belgium.ORCID 0000-0002-8985-8155
Moritz LehnersInterfaculty Institute of Biochemistry, University of Tuebingen, Tuebingen, Germany.
Marius KolodziejNatural and Medical Sciences Institute, University of Tuebingen, Reutlingen, Germany.
Birte Hernandez AlvarezDepartment of Protein Evolution, Max Planck Institute for Biology, Tuebingen, Germany.ORCID 0000-0003-0635-8698
Anna-Sophia HellmuthDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.
Malte RitterDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.ORCID 0000-0002-3670-7564
Betül FindikDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.
Viktoria ZakharovaNational Medical Research Center for Endocrinology, Clinical Data Analysis Department, National Medical Research Center for Endocrinology, Moscow, Russia.ORCID 0000-0001-5949-5317
Sandro BräuningDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.
Sergey KandabarauDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.ORCID 0000-0002-1379-7974
Claudia LengerkeDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.ORCID 0000-0001-5442-2805
Robert FeilInterfaculty Institute of Biochemistry, University of Tuebingen, Tuebingen, Germany.ORCID 0000-0002-7335-4841
Isabelle MeytsDepartment of Microbiology, Immunology, and Transplantation, Laboratory for Inborn Errors of Immunity, KU Leuven, Leuven, Belgium.ORCID 0000-0003-1214-0302
Jérôme DelonUniversité Paris Cité, French National Centre for Scientific Research, INSERM, Institut Cochin, Paris, France.
Markus TemplinNatural and Medical Sciences Institute, University of Tuebingen, Reutlingen, Germany.ORCID 0000-0002-6569-6489
Marc SturmInstitute of Medical Genetics and Applied Genomics, University Hospital Tuebingen, Tuebingen, Germany.ORCID 0000-0002-6552-8362
Olaf RießInstitute of Medical Genetics and Applied Genomics, University Hospital Tuebingen, Tuebingen, Germany.ORCID 0000-0002-7011-1369
Cornelia ZeidlerDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.ORCID 0000-0002-8943-0984
Karl WelteDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.ORCID 0000-0001-5178-3074
Anna ShcherbinaDepartment of Immunology, Dmitry Rogachev National Medical Research Center of Pediatric Hematology, Oncology and Immunology, Moscow, Russia.
Maksim KlimiankouDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.ORCID 0009-0002-9193-0133
Julia SkokowaDepartment of Oncology, Hematology, Clinical Immunology, and Rheumatology, University Hospital Tuebingen, Tuebingen, Germany.ORCID 0000-0002-4399-2324

Funding

Systems Biology of Bone Marrow Failure and MDS for Precision MedicineRC2DK122533 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI FIGUEROA, MARIA EUGENIA, FLEMING, MARK D · 2019 to 2023
$6.4M
Severe Chronic Neutropenia International RegistryR24AI162637 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI PETER E NEWBURGER, Akiko Shimamura · 2022 to 2026
$5.8M
NIAID NIH HHS R24 AI162637NIDDK NIH HHS RC2 DK122533
6 · The paper itself

Abstract

abstractWe have identified a new inherited bone marrow failure syndrome with severe congenital neutropenia (CN) caused by autosomal recessive mutations in the coatomer protein complex I (COPI) subunit zeta 1 (COPZ1) gene. A stop-codon COPZ1 mutation and a missense (MS) mutation were found in 3 patients from 2 unrelated families. Although 2 affected siblings with a stop-codon COPZ1 mutation suffered from CN that involves other hematologic lineages and nonhematologic tissues, the patient with a MS COPZ1 mutation had isolated neutropenia. Both COPZ1 mutations were localized to a highly evolutionarily conserved region. The resulting truncated (TR) COPZ1 protein was predicted to display diminished interaction with its COPI complex partner, COPG1. These findings were consistent with the observed block in retrograde protein transport from the Golgi apparatus to the endoplasmic reticulum (ER) in human fibroblasts carrying TR COPZ1. Human CD34+ cells with TR or MS COPZ1 had significantly impaired granulocytic differentiation, and in zebrafish embryos, TR Copz1 also resulted in defective myelopoiesis. Intracellularly, TR COPZ1 downregulated JAK/STAT/CEBPE/G-CSFR signaling and hypoxia-responsive pathways, while inducing STING, interferon-stimulated genes, stimulating oxidative phosphorylation activity, and increasing reactive oxygen species levels in hematopoietic cells. MS COPZ1 deregulated interferon and JAK/STAT signaling but less than the TR protein. Finally, treatment with the small molecule HIF1α stabilizer IOX2 or transduction of cells with COPZ2 restored defective granulopoiesis in COPZ1-mutated human CD34+ cells, offering potential therapeutic options.

Indexed as

MutationNeutropeniaAnimalsCongenital Bone Marrow Failure SyndromesFemaleHumansPedigreeSignal TransductionZebrafish

Identifiers

PMID39642330
PMCPMC12782985

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.