Evidence map›Paper›PMID 39657669›Full record

ArticleCell reports. Medicine2024

A prognostic molecular signature of hepatic steatosis is spatially heterogeneous and dynamic in human liver.

Andrew S Perry, Niran Hadad, Emeli Chatterjee, Maria Jimenez-Ramos, Eric Farber-Eger, Rashedeh Roshani, Lindsey K Stolze, Michael J Betti, Shilin Zhao, Shi Huang and 33 more

Abstract read
In one paragraph

Article in Cell reports. Medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Proteogenomic Analysis of Coronary Artery Calcification in Human Populations.Arteriosclerosis, thrombosis, and vascular biology · 2026
    Article
  5. Review
  6. Article
  7. Review
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  10. Article
  11. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

43 authors.

Andrew S PerryVanderbilt University School of Medicine, Nashville, TN, USA.
Niran HadadTranslational Genomics Research Institute, Phoenix, AZ, USA.
Emeli ChatterjeeCardiovascular Research Center, Massachusetts General Hospital, Boston, MA, USA.
Maria Jimenez-RamosInstitute for Regeneration and Repair, University of Edinburgh, Edinburgh, UK.
Eric Farber-EgerVanderbilt University School of Medicine, Nashville, TN, USA.
Rashedeh RoshaniVanderbilt Genetics Institute, Division of Genetic Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Lindsey K StolzeVanderbilt University School of Medicine, Nashville, TN, USA.
Michael J BettiVanderbilt University School of Medicine, Nashville, TN, USA.
Shilin ZhaoVanderbilt University School of Medicine, Nashville, TN, USA.
Shi HuangVanderbilt University School of Medicine, Nashville, TN, USA.
Liesbet MartensLaboratory of Myeloid Cell Biology in Tissue Homeostasis and Regeneration, VIB-UGent Center for Inflammation Research, Ghent, Belgium; Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium.
Timothy J KendallInstitute for Regeneration and Repair, University of Edinburgh, Edinburgh, UK; Edinburgh Pathology, University of Edinburgh, Edinburgh, UK.
Tinne ThoneLaboratory of Myeloid Cell Biology in Tissue Homeostasis and Regeneration, VIB-UGent Center for Inflammation Research, Ghent, Belgium; Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium.
Kaushik AmancherlaVanderbilt University School of Medicine, Nashville, TN, USA.
Samuel BailinDivision of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Curtis L GabrielDivision of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
John KoetheDivision of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
J Jeffrey CarrVanderbilt University School of Medicine, Nashville, TN, USA.
James Greg TerryVanderbilt University School of Medicine, Nashville, TN, USA.
Nataraja Sarma VaitinadinVanderbilt University School of Medicine, Nashville, TN, USA.
Jane E FreedmanVanderbilt University School of Medicine, Nashville, TN, USA.
Kahraman TanriverdiVanderbilt University School of Medicine, Nashville, TN, USA.
Eric AlsopTranslational Genomics Research Institute, Phoenix, AZ, USA.
Kendall Van Keuren-JensenTranslational Genomics Research Institute, Phoenix, AZ, USA.
John F K SauldEmulate Inc., Boston, MA, USA.
Gautam MahajanEmulate Inc., Boston, MA, USA.
Sadiya S KhanFeinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Laura ColangeloDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Matthew NayorSections of Cardiovascular Medicine and Preventive Medicine and Epidemiology, Department of Medicine, Boston University School of Medicine, Boston, MA, USA.
Susan Fisher-HochSchool of Public Health, The University of Texas Health Science Center at Houston, Brownsville, TX, USA.
Joseph B McCormickSchool of Public Health, The University of Texas Health Science Center at Houston, Brownsville, TX, USA.
Kari E NorthCVD Genetic Epidemiology Computational Laboratory, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC, USA.
Jennifer E BelowVanderbilt Genetics Institute, Division of Genetic Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Quinn S WellsVanderbilt University School of Medicine, Nashville, TN, USA.
E Dale AbelDepartment of Medicine, David Geffen School of Medicine and UCLA Health, University of California-Los Angeles, Los Angeles, CA, USA.
Ravi KalhanFeinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Charlotte ScottLaboratory of Myeloid Cell Biology in Tissue Homeostasis and Regeneration, VIB-UGent Center for Inflammation Research, Ghent, Belgium; Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium.
Martin GuilliamsLaboratory of Myeloid Cell Biology in Tissue Homeostasis and Regeneration, VIB-UGent Center for Inflammation Research, Ghent, Belgium; Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium.
Eric R GamazonVanderbilt University School of Medicine, Nashville, TN, USA.
Jonathan A FallowfieldInstitute for Regeneration and Repair, University of Edinburgh, Edinburgh, UK. Electronic address: jonathan.fallowfield@ed.ac.uk.
Nicholas E BanovichTranslational Genomics Research Institute, Phoenix, AZ, USA. Electronic address: nbanovich@tgen.org.
Saumya DasCardiovascular Research Center, Massachusetts General Hospital, Boston, MA, USA. Electronic address: sdas@mgh.harvard.edu.
Ravi ShahVanderbilt University School of Medicine, Nashville, TN, USA. Electronic address: ravi.shah@vumc.org.

Funding

Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
Transitions from Impaired Respiratory Health to Lung DiseaseR01HL122477 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI RAVI KALHAN · 2014 to 2026
$17.3M
Functional role and therapeutic targeting of exosomes and extracellular RNA biomarkers in heart failureR35HL150807 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI Saumya Das · 2020 to 2026
$6.7M
NHLBI NIH HHS R01 HL122477NHLBI NIH HHS R35 HL150807NIDDK NIH HHS P30 DK058404
6 · The paper itself

Abstract

Hepatic steatosis is a central phenotype in multi-system metabolic dysfunction and is increasing in parallel with the obesity pandemic. We use a translational approach integrating clinical phenotyping and outcomes, circulating proteomics, and tissue transcriptomics to identify dynamic, functional biomarkers of hepatic steatosis. Using multi-modality imaging and broad proteomic profiling, we identify proteins implicated in the progression of hepatic steatosis that are largely encoded by genes enriched at the transcriptional level in the human liver. These transcripts are differentially expressed across areas of steatosis in spatial transcriptomics, and several are dynamic during stages of steatosis. Circulating multi-protein signatures of steatosis strongly associate with fatty liver disease and multi-system metabolic outcomes. Using a humanized "liver-on-a-chip" model, we induce hepatic steatosis, confirming cell-specific expression of prioritized targets. These results underscore the utility of this approach to identify a prognostic, functional, dynamic "liquid biopsy" of human liver, relevant to biomarker discovery and mechanistic research applications.

Indexed as

BiomarkersFatty LiverLiverFemaleGene Expression ProfilingHumansMaleMiddle AgedPrognosisProteomicsTranscriptomeBiomarkersdiabetesliver-on-a-chipmetabolic dysfunction-associated steatotic liver diseasenon-alcoholic fatty liver diseaseproteomics

Identifiers

PMID39657669
PMCPMC11722105

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.