Evidence map›Paper›PMID 39658721›Full record

ArticleNature cardiovascular research2024

PDGFRA is a conserved HAND2 effector during early cardiac development.

Yanli Xu, Rupal Gehlot, Samuel J Capon, Marga Albu, Jonas Gretz, Joshua Bloomekatz, Kenny Mattonet, Dubravka Vucicevic, Sweta Talyan, Khrievono Kikhi and 8 more

Abstract read
In one paragraph

Article in Nature cardiovascular research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Yanli XuDepartment of Developmental Genetics, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Rupal GehlotDepartment of Developmental Genetics, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.ORCID http://orcid.org/0009-0008-8709-2337
Samuel J CaponDepartment of Developmental Genetics, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.ORCID http://orcid.org/0000-0003-3949-4696
Marga AlbuDepartment of Developmental Genetics, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.ORCID http://orcid.org/0009-0004-9409-8762
Jonas GretzDepartment of Developmental Genetics, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Joshua BloomekatzDivision of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-5816-2756
Kenny MattonetDepartment of Developmental Genetics, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Dubravka VucicevicMax Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin Institute for Medical Systems Biology (BIMSB), Berlin, Germany.
Sweta TalyanBioinformatics Core Unit (BCU), Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Khrievono KikhiFlow Cytometry Service Group, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.ORCID http://orcid.org/0000-0001-5672-3791
Stefan GüntherBioinformatics and Deep Sequencing Platform, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.ORCID http://orcid.org/0000-0002-5594-4549
Mario LoosoBioinformatics Core Unit (BCU), Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.ORCID http://orcid.org/0000-0003-1495-9530
Beth A FirulliHerman B Wells Center for Pediatric Research, Departments of Pediatrics, Anatomy and Medical and Molecular Genetics, Indiana Medical School, Indianapolis, IN, USA.
Miloslav SandaBiomolecular Mass Spectrometry, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Anthony B FirulliHerman B Wells Center for Pediatric Research, Departments of Pediatrics, Anatomy and Medical and Molecular Genetics, Indiana Medical School, Indianapolis, IN, USA.
Scott Allen LacadieMax Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin Institute for Medical Systems Biology (BIMSB), Berlin, Germany.
Deborah YelonDivision of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-3523-4053
Didier Y R StainierDepartment of Developmental Genetics, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany. didier.stainier@mpi-bn.mpg.de.ORCID http://orcid.org/0000-0002-0382-0026

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The basic helix-loop-helix transcription factor HAND2 has multiple roles during vertebrate organogenesis, including cardiogenesis. However, much remains to be uncovered about its mechanism of action. Here, we show the generation of several hand2 mutant alleles in zebrafish and demonstrate that dimerization-deficient mutants display the null phenotype but DNA-binding-deficient mutants do not. Rescue experiments with Hand2 variants using a newly identified hand2 enhancer confirmed these observations. To identify Hand2 effectors critical for cardiogenesis, we analyzed the transcriptomes of hand2 loss- and gain-of-function embryonic cardiomyocytes and tested the function of eight candidate genes in vivo; pdgfra was most effective in rescuing myocardial migration in hand2 mutants. Accordingly, we identified a putative Hand2-binding region in the zebrafish pdgfra locus that is important for its expression. In addition, Hand2 loss- and gain-of-function experiments in mouse embryonic stem cell-derived cardiac cells decreased and increased Pdgfra expression, respectively. Altogether, these results further our mechanistic understanding of HAND2 function during early cardiogenesis.

Indexed as

Basic Helix-Loop-Helix ProteinsGene Expression Regulation, DevelopmentalMyocytes, CardiacReceptor, Platelet-Derived Growth Factor alphaZebrafishZebrafish ProteinsAnimalsAnimals, Genetically ModifiedBinding SitesCell MovementHeartMiceMouse Embryonic Stem CellsMutationOrganogenesisPhenotypeBasic Helix-Loop-Helix ProteinsHand2 protein, mousehand2 protein, zebrafishReceptor, Platelet-Derived Growth Factor alphaZebrafish Proteins

Identifiers

PMID39658721
PMCPMC11634778

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.