Evidence map›Paper›PMID 39667348›Full record

ArticleCell genomics2024

Effects of gene dosage on cognitive ability: A function-based association study across brain and non-brain processes.

Guillaume Huguet, Thomas Renne, Cécile Poulain, Alma Dubuc, Kuldeep Kumar, Sayeh Kazem, Worrawat Engchuan, Omar Shanta, Elise Douard, Catherine Proulx and 20 more

Abstract read
In one paragraph

Article in Cell genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Genetic and Cortical Cell-Type Liability Architecture of Autism.bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Guillaume HuguetCentre Hospitalier Universitaire Sainte-Justine Research Center, Montreal, QC, Canada. Electronic address: guillaumeaf.huguet@gmail.com.
Thomas RenneCentre Hospitalier Universitaire Sainte-Justine Research Center, Montreal, QC, Canada; Department of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, QC, Canada.
Cécile PoulainCentre Hospitalier Universitaire Sainte-Justine Research Center, Montreal, QC, Canada; Department of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, QC, Canada.
Alma DubucÉcole Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, Université de Lyon, Lyon, France.
Kuldeep KumarCentre Hospitalier Universitaire Sainte-Justine Research Center, Montreal, QC, Canada.
Sayeh KazemCentre Hospitalier Universitaire Sainte-Justine Research Center, Montreal, QC, Canada; Department of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, QC, Canada.
Worrawat EngchuanThe Hospital for Sick Children, Genetics and Genome Biology, Toronto, ON, Canada; The Hospital for Sick Children, The Centre for Applied Genomics, Toronto, ON, Canada.
Omar ShantaBioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA, USA.
Elise DouardCentre Hospitalier Universitaire Sainte-Justine Research Center, Montreal, QC, Canada.
Catherine ProulxCentre Hospitalier Universitaire Sainte-Justine Research Center, Montreal, QC, Canada.
Martineau Jean-LouisCentre Hospitalier Universitaire Sainte-Justine Research Center, Montreal, QC, Canada.
Zohra SaciCentre Hospitalier Universitaire Sainte-Justine Research Center, Montreal, QC, Canada.
Josephine MollonDepartment of Psychiatry, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Laura M SchultzDepartment of Biomedical and Health Informatics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Emma E M KnowlesDepartment of Psychiatry, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Simon R CoxLothian Birth Cohorts, Department of Psychology, School of Philosophy, Psychology and Language Sciences, The University of Edinburgh, Edinburgh EH8 9JZ, UK.
David PorteousLothian Birth Cohorts, Department of Psychology, School of Philosophy, Psychology and Language Sciences, The University of Edinburgh, Edinburgh EH8 9JZ, UK; Medical Genetics Section, Centre for Genomic & Experimental Medicine, MRC Institute of Genetics & Molecular Medicine, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK; Generation Scotland, Centre for Genomic and Experimental Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK.
Gail DaviesLothian Birth Cohorts, Department of Psychology, School of Philosophy, Psychology and Language Sciences, The University of Edinburgh, Edinburgh EH8 9JZ, UK.
Paul RedmondLothian Birth Cohorts, Department of Psychology, School of Philosophy, Psychology and Language Sciences, The University of Edinburgh, Edinburgh EH8 9JZ, UK.
Sarah E HarrisLothian Birth Cohorts, Department of Psychology, School of Philosophy, Psychology and Language Sciences, The University of Edinburgh, Edinburgh EH8 9JZ, UK.
Gunter SchumannInstitute of Psychiatry, Psychology, and Neuroscience, King's College London, London, UK.
Guillaume DumasCentre Hospitalier Universitaire Sainte-Justine Research Center, Montreal, QC, Canada; Mila - Quebec Artificial Intelligence Institute, Montréal, QC, Canada.
Aurélie LabbeDépartement de Sciences de la Décision, HEC Montreal, Montreal, QC, Canada.
Zdenka PausovaResearch Institute of the Hospital for Sick Children, Toronto, ON, Canada; Departments of Physiology and Nutritional Sciences, University of Toronto, Toronto, ON, Canada; ECOGENE-21, Chicoutimi, QC, Canada.
Tomas PausCentre Hospitalier Universitaire Sainte-Justine Research Center, Montreal, QC, Canada; Department of Psychiatry and Addictology, Department of Neuroscience, Faculty of Medicine, Université de Montréal, Montreal, QC, Canada.
Stephen W SchererThe Hospital for Sick Children, Genetics and Genome Biology, Toronto, ON, Canada; The Hospital for Sick Children, The Centre for Applied Genomics, Toronto, ON, Canada; McLaughlin Centre and Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada.
Jonathan SebatUniversity of California, San Diego, Department of Psychiatry, Department of Cellular & Molecular Medicine, Beyster Center of Psychiatric Genomics, San Diego, CA, USA.
Laura AlmasyDepartment of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
David C GlahnDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA; Olin Neuropsychiatric Research Center, Institute of Living, Hartford Hospital, Hartford, CT, USA.
Sébastien JacquemontCentre Hospitalier Universitaire Sainte-Justine Research Center, Montreal, QC, Canada; Department of Pediatrics, Université de Montréal, Montreal, QC, Canada. Electronic address: sebastien.jacquemont@umontreal.ca.

Funding

Training U54EB020403 · NIBIB · UNIVERSITY OF SOUTHERN CALIFORNIA · PI THOMPSON, PAUL M · 2014 to 2018
$10.1M
Genetic Analysis and Manipulation Core (GAEC)P50HD105351 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI Hisashi Umemori · 2021 to 2026
$9.4M
Large-Scale Evaluation of the Effect of Rare Genetic Variants on Psychiatric Symptoms and Cognitive AbilityU01MH119690 · NIMH · BOSTON CHILDREN'S HOSPITAL · PI ALMASY, LAURA A., GLAHN, DAVID C · 2019 to 2023
$5.9M
Neurodevelopment and Psychosis in the 22q11.2 Copy Number VariantsR37MH085953 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CARRIE E BEARDEN · 2023 to 2026
$2.9M
A decentralized macro and micro gene-by-environment interaction analysis of substance use behavior and its brain biomarkers R01DA049238 · NIDA · GEORGIA STATE UNIVERSITY · PI CALHOUN, VINCE D, LIU, JINGYU · 2019 to 2023
$2.9M
Understanding Rare Genetic Variation and Disease Risk: A Global Neurogenetics InitiativeR01MH129858 · NIMH · SAINTE-JUSTINE UNIVERSITY HOSPITAL CTR · PI CARRIE E BEARDEN, Sebastien Jacquemont · 2023 to 2026
$2.4M
ENIGMA World Aging CenterR56AG058854 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI THOMPSON, PAUL M · 2018 to 2018
$683k
6/9: Dissecting the effects of genomic variants on neurobehavioral dimensions in CNVs enriched for neuropsychiatric disorders.U01MH119739 · NIMH · SAINTE-JUSTINE UNIVERSITY HOSPITAL CTR · PI JACQUEMONT, SEBASTIEN · 2020 to 2024
$527k
Medical Research Council MR/R00465X/1Medical Research Council MR/S020306/1NIA NIH HHS R56 AG058854NIBIB NIH HHS U54 EB020403NICHD NIH HHS P50 HD105351NIDA NIH HHS R01 DA049238NIMH NIH HHS R01 MH129858NIMH NIH HHS R37 MH085953NIMH NIH HHS U01 MH119690NIMH NIH HHS U01 MH119739
6 · The paper itself

Abstract

Copy-number variants (CNVs) that increase the risk for neurodevelopmental disorders also affect cognitive ability. However, such CNVs remain challenging to study due to their scarcity, limiting our understanding of gene-dosage-sensitive biological processes linked to cognitive ability. We performed a genome-wide association study (GWAS) in 258,292 individuals, which identified-for the first time-a duplication at 2q12.3 associated with higher cognitive performance. We developed a functional-burden analysis, which tested the association between cognition and CNVs disrupting 6,502 gene sets biologically defined across tissues, cell types, and ontologies. Among those, 864 gene sets were associated with cognition, and effect sizes of deletion and duplication were negatively correlated. The latter suggested that functions across all biological processes were sensitive to either deletions (e.g., subcortical regions, postsynaptic) or duplications (e.g., cerebral cortex, presynaptic). Associations between non-brain tissues and cognition were driven partly by constrained genes, which may shed light on medical comorbidities in neurodevelopmental disorders.

Indexed as

BrainCognitionDNA Copy Number VariationsGene DosageGenome-Wide Association StudyAdultFemaleHumansMaleburden associationCNV-GWAScognitive abilitycopy-number variantsgene dosageGene Ontologygenetic constrainttranscriptomic

Identifiers

PMID39667348
PMCPMC11701252

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.