Evidence map›Paper›PMID 39668257›Full record

ArticleNature structural & molecular biology2025

Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells.

Liang Xue, Christian M T Spahn, Magdalena Schacherl, Julia Mahamid

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Approaches for Studying Context Specificity of Translation Inhibitor Action.International journal of molecular sciences · 2026
    Review
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  3. Article
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  11. In-cell chromatin structure by Cryo-FIB and Cryo-ET.Current opinion in structural biology · 2025
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Liang XueStructural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. liangxue@ibp.ac.cn.
Christian M T SpahnInstitut für Medizinische Physik und Biophysik, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0002-2939-9487
Magdalena SchacherlInstitut für Medizinische Physik und Biophysik, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany. magdalena.schacherl@charite.de.ORCID http://orcid.org/0000-0002-5478-2509
Julia MahamidStructural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. julia.mahamid@embl.de.ORCID http://orcid.org/0000-0001-6968-041X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribosome-targeting antibiotics represent an important class of antimicrobial drugs. Chloramphenicol (Cm) is a well-studied ribosomal peptidyl transferase center (PTC) binder and growing evidence suggests that its inhibitory action depends on the sequence of the nascent peptide. How such selective inhibition on the molecular scale manifests on the cellular level remains unclear. Here, we use cryo-electron tomography to analyze the impact of Cm inside the bacterium Mycoplasma pneumoniae. By resolving the Cm-bound ribosomes to 3.0 Å, we elucidate Cm's coordination with natural nascent peptides and transfer RNAs in the PTC. We find that Cm leads to the accumulation of a number of translation elongation states, indicating ongoing futile accommodation cycles, and to extensive ribosome collisions. We, thus, suggest that, beyond its direct inhibition of protein synthesis, the action of Cm may involve the activation of cellular stress responses. This work exemplifies how in-cell structural biology can expand the understanding of mechanisms of action for extensively studied antibiotics.

Indexed as

Anti-Bacterial AgentsChloramphenicolMycoplasma pneumoniaeProtein Synthesis InhibitorsPeptide Chain Elongation, TranslationalProtein Interaction MappingProtein Structure, QuaternaryRibosomesAnti-Bacterial AgentsChloramphenicolProtein Synthesis Inhibitors

Identifiers

PMID39668257
PMCPMC11832420

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.