ArticleScientific data2024
Chromosome-level genome assembly of Phortica okadai, a vector of Thelazia callipaeda.
Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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8 authors.
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Abstract
Phortica okadai, known as the vector of Thelazia callipaeda in Asia, is of concern to public health in the past few decades. We generated a high-quality chromosome-level genome assembly of P. okadai with a size of 263.82 Mb and a contig N50 of 15 Mb, scaffold N50 of 47.45 Mb, combining PacBio HiFi, Illumina short-reads, and Hi-C sequencing data. Approximately 98.5% of 100 contigs could be properly ordered and oriented into 6 pseudo-chromosomes and a total of 15,052 protein-coding genes were obtained from the P. okadai genome, of which 91.76% were functionally annotated. BUSCO analysis revealed that 96.20% of 1315 predicted genes were clearly covered the conserved invertebrate genes within the database. Additionally, 302 rRNAs, 377 tRNAs, 52 miRNAs, 40 snRNAs and 21 snoRNAs were detected. In conclusion, this high-quality chromosome level reference genome will be a valuable resource for furthering the fields of ecology, genetics, evolution and functional genomics of P. okadai.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.