Evidence map›Paper›PMID 39703614›Full record

ArticleFrontiers in behavioral neuroscience2024

SARTAB, a scalable system for automated real-time behavior detection based on animal tracking and Region Of Interest analysis: validation on fish courtship behavior.

Tucker J Lancaster, Kathryn N Leatherbury, Kseniia Shilova, Jeffrey T Streelman, Patrick T McGrath

Abstract read
In one paragraph

Article in Frontiers in behavioral neuroscience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tucker J LancasterMcGrath Lab, Georgia Institute of Technology, School of Biological Sciences, Atlanta, GA, United States.
Kathryn N LeatherburyStreelman Lab, Georgia Institute of Technology, School of Biological Sciences, Atlanta, GA, United States.
Kseniia ShilovaMcGrath Lab, Georgia Institute of Technology, School of Biological Sciences, Atlanta, GA, United States.
Jeffrey T StreelmanStreelman Lab, Georgia Institute of Technology, School of Biological Sciences, Atlanta, GA, United States.
Patrick T McGrathMcGrath Lab, Georgia Institute of Technology, School of Biological Sciences, Atlanta, GA, United States.

Funding

Identification and study of adaptive mutations and phenotypes using laboratory growth of C. elegansR35GM139594 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI MCGRATH, PATRICK T · 2021 to 2025
$2.0M
Cellular basis of complex social behaviorR01GM144560 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI STREELMAN, JEFFERY TODD · 2022 to 2023
$723k
A modeling framework and arena for measuring contextual influences of behaviorR34DA059510 · NIDA · GEORGIA INSTITUTE OF TECHNOLOGY · PI DYER, EVA, MCGRATH, PATRICK T · 2024 to 2025
$644k
NIDA NIH HHS R34 DA059510NIGMS NIH HHS R01 GM144560NIGMS NIH HHS R35 GM139594
6 · The paper itself

Abstract

Methods from Machine Learning (ML) and Computer Vision (CV) have proven powerful tools for quickly and accurately analyzing behavioral recordings. The computational complexity of these techniques, however, often precludes applications that require real-time analysis: for example, experiments where a stimulus must be applied in response to a particular behavior or samples must be collected soon after the behavior occurs. Here, we describe SARTAB (Scalable Automated Real-Time Analysis of Behavior), a system that achieves automated real-time behavior detection by continuously monitoring animal positions relative to behaviorally relevant Regions Of Interest (ROIs). We then show how we used this system to detect infrequent courtship behaviors in

Indexed as

behaviorcichlid fishcomputational ethologyComputer VisionMachine Learningreal-time analysis

Identifiers

PMID39703614
PMCPMC11655190

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.