Evidence map›Paper›PMID 39705142›Full record

ArticleCell reports2025

The differential interactomes of the KRAS splice variants identify BIRC6 as a ubiquitin ligase for KRAS4A.

Juan Kochen Rossi, Cristina Nuevo-Tapioles, Rachel A O'Keefe, Moritz Hunkeler, Anna M Schmoker, Mercedes Fissore-O'Leary, Wenjuan Su, Ian M Ahearn, Cristina Branco, Hakyung Cheong and 5 more

Abstract read
In one paragraph

Article in Cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. The IAP family member BRUCE/BIRC6: an emerging new player in balancing life and death.Apoptosis : an international journal on programmed cell death · 2026
    Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Juan Kochen RossiPerlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY 10016, USA.
Cristina Nuevo-TapiolesPerlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY 10016, USA.
Rachel A O'KeefePerlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY 10016, USA.
Moritz HunkelerDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Anna M SchmokerDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Mercedes Fissore-O'LearyPerlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY 10016, USA.
Wenjuan SuPerlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY 10016, USA.
Ian M AhearnPerlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY 10016, USA.
Cristina BrancoPerlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY 10016, USA.
Hakyung CheongDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Dominic EspositoFrederick National Laboratory for Cancer Research, Frederick, MD 21702, USA.
Ioana CloteaPerlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY 10016, USA.
Beatrix UeberheidePerlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY 10016, USA.
Eric S FischerDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Mark R PhilipsPerlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY 10016, USA. Electronic address: mark.philips@nyulangone.org.

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MARK Reid PHILIPS · 1985 to 2026
$83.1M
Medical Scientist Research Service AwardT32GM136573 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SULMAN, ERIK · 2020 to 2024
$6.8M
Differential function and tumor vulnerabilities revealed by RAS membrane traffickingR35CA253178 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MARK Reid PHILIPS · 2020 to 2026
$6.8M
Development of a generalizable chemo-proteomics screening platform for small molecule degraders applied to HDACsR01CA262188 · NCI · DANA-FARBER CANCER INST · PI FISCHER, ERIC SEBASTIAN · 2022 to 2025
$1.8M
Acquisition of an Orbitrap Elite Mass Spectrometer with ETDS10OD010582 · OD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI UEBERHEIDE, BEATRIX MAGDALENA · 2013 to 2013
$600k
Characterization of the PKM2-RAS Interaction as a Novel Metabolic Vulnerability of RAS-driven TumorsF31CA261120 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KOCHEN ROSSI, JUAN ANDRES · 2021 to 2022
$76k
NCI NIH HHS F31 CA261120NCI NIH HHS P30 CA016087NCI NIH HHS R01 CA262188NCI NIH HHS R35 CA253178NIGMS NIH HHS T32 GM136573NIH HHS S10 OD010582
6 · The paper itself

Abstract

Transcripts of the KRAS locus are alternatively spliced to generate two proteins, KRAS4A and KRAS4B, which differ in their membrane-targeting sequences. These splice variants have been conserved for more than 450 million years, suggesting non-overlapping functions driven by differential membrane association. Here, we use proximity labeling to map the differential interactomes of the KRAS splice variants. We find 24 and 10 proteins that interact specifically with KRAS4A or KRAS4B, respectively. The KRAS interacting protein most specific to KRAS4A is BIRC6, a large member of the inhibitor of apoptosis protein family unique in possessing E2/E3 ubiquitin ligase activity. We find that this interaction takes place on the Golgi apparatus and results in the mono- and di-ubiquitination of KRAS4A at lysines 128 and 147. Silencing BIRC6 diminishes GTP loading of and growth stimulation by KRAS4A but not KRAS4B. Thus, BIRC6 is a ubiquitin ligase that inhibits apoptosis and also modifies KRAS4A.

Indexed as

Alternative SplicingInhibitor of Apoptosis ProteinsProto-Oncogene Proteins p21(ras)Ubiquitin-Protein LigasesApoptosisGolgi ApparatusHEK293 CellsHumansProtein BindingProtein IsoformsUbiquitinationBIRC6 protein, humanInhibitor of Apoptosis ProteinsKRAS protein, humanProtein IsoformsProto-Oncogene Proteins p21(ras)Ubiquitin-Protein Ligasesalternative splicingBIRC6CP: Molecular biologyinhibitor of apoptosis proteinsKRASKRAS4Aoncogenepost-translational modificationubiquitination

Identifiers

PMID39705142
PMCPMC12309726

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.