Evidence map›Paper›PMID 39710940›Full record

ArticleExpert review of proteomics2024

Spatial Proteomics towards cellular Resolution.

Yumi Kwon, James M Fulcher, Ljiljana Paša-Tolić, Wei-Jun Qian

Abstract read
In one paragraph

Article in Expert review of proteomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yumi KwonEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington, USA.ORCID 0000-0003-0523-6197
James M FulcherEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington, USA.ORCID 0000-0001-9033-3623
Ljiljana Paša-TolićEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington, USA.ORCID 0000-0001-9853-5457
Wei-Jun QianBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.ORCID 0000-0002-5393-2827

Funding

Organ Specific ProjectU54DK127823 · NIDDK · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI MATHEWS, CLAYTON E · 2020 to 2023
$5.1M
Discovery and Roles of In Situ Islet Neoantigens in Human Type 1 DiabetesR01DK135081 · NIDDK · UNIVERSITY OF FLORIDA · PI CLAYTON E MATHEWS, DAVID A OSTROV · 2023 to 2026
$2.8M
Massive single cell proteomics for cancer biologyR01CA272377 · NCI · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI PASA-TOLIC, LJILJANA · 2022 to 2024
$1.9M
Spatially resolved characterization of proteoforms for functional proteomicsUH3CA256959 · NCI · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI PASA-TOLIC, LJILJANA · 2022 to 2023
$1.0M
NCI NIH HHS R01 CA272377NCI NIH HHS UH3 CA256959NIDDK NIH HHS R01 DK135081NIDDK NIH HHS U54 DK127823
6 · The paper itself

Abstract

introductionSpatial biology is an emerging interdisciplinary field facilitating biological discoveries through the use of spatial omics technologies. Recent advancements in spatial transcriptomics, spatial genomics (e.g. genetic mutations and epigenetic marks), multiplexed immunofluorescence, and spatial metabolomics/lipidomics have enabled high-resolution spatial profiling of gene expression, genetic variation, protein expression, and metabolites/lipids profiles in tissue. These developments contribute to a deeper understanding of the spatial organization within tissue microenvironments at the molecular level. AREAS COVERED: This report provides an overview of the untargeted, bottom-up mass spectrometry (MS)-based spatial proteomics workflow. It highlights recent progress in tissue dissection, sample processing, bioinformatics, and liquid chromatography (LC)-MS technologies that are advancing spatial proteomics toward cellular resolution. EXPERT OPINION: The field of untargeted MS-based spatial proteomics is rapidly evolving and holds great promise. To fully realize the potential of spatial proteomics, it is critical to advance data analysis and develop automated and intelligent tissue dissection at the cellular or subcellular level, along with high-throughput LC-MS analyses of thousands of samples. Achieving these goals will necessitate significant advancements in tissue dissection technologies, LC-MS instrumentation, and computational tools.

Indexed as

Laser-capture microdissectionmass spectrometrynanoPOTSproteomicssingle-cell proteomicsspatial biologyspatial omics

Identifiers

PMID39710940
PMCPMC12187944

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.