ArticleScientific data2024
Whole genome sequencing of three native chicken varieties (Common Deshi, Hilly and Naked Neck) of Bangladesh.
Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
4 citing papers in PubMed.
- ONYX: an alignment-free biological sex inference from high-throughput sequencing data.Frontiers in bioinformatics · 2026Article
- Whole-genome variant of 220 Tibetan sheep from the Qinghai-Tibetan Plateau.Scientific data · 2025Article
- Molecular detection and risk factors of Eimeria in native and exotic chickens under varying management systems in Bangladesh.PloS one · 2025Article
- Omics in mini-livestock: a genomic perspective on the future of sustainable food systems.Frontiers in genetics · 2025Review
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Bangladeshi indigenous chicken varieties - Common Deshi, Hilly and Naked Neck are notable for their egg production, meat quality, extraordinary survivability and disease resistance. However, the potential to harness their unique genetic merits are being eroded by various factors, including crossbreeding. In-depth genomic studies have not been carried out on these breeds so far. To this end, blood samples and associated phenotypic metadata have been collected from local, unimproved birds sampled from 8 different locations across the country, and from Bangladesh Livestock Research Institute (BLRI)-improved chickens of the same mentioned breeds. Whole Genome Sequencing (WGS) of 96 selected samples, representing local and improved populations of each breed, has been carried out. Around 22 M high-quality SNPs have been identified, with 25% of these being novel variants previously undescribed in public databases. This data set will allow for genetic comparison between breeds, and between selected and unimproved birds, providing a resource for genomic selection in Bangladeshi breeding schemes to create more productive and resilient poultry stock.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.